RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 NR2E3Q9Y5X4 410 aa20.63■□□□□ 0.89
CLN3-211ENST00000564091 IDH1O75874 414 aaKnown RBP20.62■□□□□ 0.89
CLN3-211ENST00000564091 TRIM32Q13049 653 aa20.62■□□□□ 0.89
CLN3-211ENST00000564091 CRISPLD2Q9H0B8 497 aa20.62■□□□□ 0.89
CLN3-211ENST00000564091 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-211ENST00000564091 MORF4L1Q9UBU8 362 aa20.62■□□□□ 0.89
CLN3-211ENST00000564091 NDUFB9Q9Y6M9 179 aa20.62■□□□□ 0.89
CLN3-211ENST00000564091 HOXA7P31268 230 aaPredicted RBP20.61■□□□□ 0.89
CLN3-211ENST00000564091 MIGA1Q8NAN2 632 aa20.61■□□□□ 0.89
CLN3-211ENST00000564091 PAWRQ96IZ0 340 aaKnown RBP20.61■□□□□ 0.89
CLN3-211ENST00000564091 TXNRD2Q9NNW7 524 aa20.61■□□□□ 0.89
CLN3-211ENST00000564091 ZBTB21Q9ULJ3 1066 aa20.61■□□□□ 0.89
CLN3-211ENST00000564091 DOCK1Q14185 1865 aa20.6■□□□□ 0.89
CLN3-211ENST00000564091 USP17L10C9JJH3 530 aa20.6■□□□□ 0.89
CLN3-211ENST00000564091 EVI5O60447 810 aa20.6■□□□□ 0.89
CLN3-211ENST00000564091 HMGCRP04035 888 aa20.6■□□□□ 0.89
CLN3-211ENST00000564091 HLA-DOAP06340 250 aa20.6■□□□□ 0.89
CLN3-211ENST00000564091 HERVK_113P62684 666 aa20.6■□□□□ 0.89
CLN3-211ENST00000564091 DIS3LQ8TF46 1054 aaKnown RBP20.6■□□□□ 0.89
CLN3-211ENST00000564091 ANTXR1Q9H6X2 564 aa20.6■□□□□ 0.89
CLN3-211ENST00000564091 LAMA3Q16787 3333 aa20.59■□□□□ 0.89
CLN3-211ENST00000564091 C19orf81C9J6K1 198 aa20.59■□□□□ 0.89
CLN3-211ENST00000564091 CYP2B6P20813 491 aa20.59■□□□□ 0.89
CLN3-211ENST00000564091 MAGEB6Q8N7X4 407 aa20.59■□□□□ 0.89
CLN3-211ENST00000564091 GPRC5AQ8NFJ5 357 aa20.59■□□□□ 0.89
CLN3-211ENST00000564091 PRO3102Q9H379 93 aa20.59■□□□□ 0.89
CLN3-211ENST00000564091 IGSF3O75054 1194 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 GH2P01242 217 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 CAPN2P17655 700 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 Q3C1V9 767 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 CEP85Q6P2H3 762 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 TRIB2Q92519 343 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 EMILIN3Q9NT22 766 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 GINM1Q9NU53 330 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 RBPJLQ9UBG7 517 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 EXOC6BQ9Y2D4 811 aa20.58■□□□□ 0.89
CLN3-211ENST00000564091 PHIPQ8WWQ0 1821 aa20.57■□□□□ 0.88
CLN3-211ENST00000564091 USP5P45974 858 aa20.57■□□□□ 0.88
CLN3-211ENST00000564091 POTEEQ6S8J3 1075 aa20.57■□□□□ 0.88
CLN3-211ENST00000564091 NECAB2Q7Z6G3 386 aa20.57■□□□□ 0.88
CLN3-211ENST00000564091 HMX1Q9NP08 348 aaPredicted RBP20.57■□□□□ 0.88
CLN3-211ENST00000564091 RPTORQ8N122 1335 aa20.56■□□□□ 0.88
CLN3-211ENST00000564091 AACSQ86V21 672 aa20.56■□□□□ 0.88
CLN3-211ENST00000564091 MIER1Q8N108 512 aa20.56■□□□□ 0.88
CLN3-211ENST00000564091 PANK1Q8TE04 598 aa20.56■□□□□ 0.88
CLN3-211ENST00000564091 NUDT12Q9BQG2 462 aa20.56■□□□□ 0.88
CLN3-211ENST00000564091 PAGR1Q9BTK6 254 aa20.56■□□□□ 0.88
CLN3-211ENST00000564091 MAP3K12Q12852 859 aa20.55■□□□□ 0.88
CLN3-211ENST00000564091 ZYXQ15942 572 aaKnown RBP20.55■□□□□ 0.88
CLN3-211ENST00000564091 USP17L2Q6R6M4 530 aa20.55■□□□□ 0.88
CLN3-211ENST00000564091 PORCNQ9H237 461 aa20.55■□□□□ 0.88
CLN3-211ENST00000564091 STAP2Q9UGK3 403 aa20.55■□□□□ 0.88
CLN3-211ENST00000564091 MNX1P50219 401 aaPredicted RBP20.54■□□□□ 0.88
CLN3-211ENST00000564091 ERVK-9P63128 1117 aa20.54■□□□□ 0.88
CLN3-211ENST00000564091 ERVK-24P63145 666 aa20.54■□□□□ 0.88
CLN3-211ENST00000564091 TATDN1Q6P1N9 297 aa20.54■□□□□ 0.88
CLN3-211ENST00000564091 IL1RAPL2Q9NP60 686 aa20.54■□□□□ 0.88
CLN3-211ENST00000564091 SERPINB13Q9UIV8 391 aa20.54■□□□□ 0.88
CLN3-211ENST00000564091 PTPRFP10586 1907 aa20.54■□□□□ 0.88
CLN3-211ENST00000564091 PRKAR2AP13861 404 aaKnown RBP20.53■□□□□ 0.88
CLN3-211ENST00000564091 MAPK4P31152 587 aa20.53■□□□□ 0.88
CLN3-211ENST00000564091 RAB3GAP1Q15042 981 aa20.53■□□□□ 0.88
CLN3-211ENST00000564091 CCAR1Q8IX12 1150 aaKnown RBP20.53■□□□□ 0.88
CLN3-211ENST00000564091 ANKLE1Q8NAG6 615 aa20.53■□□□□ 0.88
CLN3-211ENST00000564091 SOCS4Q8WXH5 440 aa20.53■□□□□ 0.88
CLN3-211ENST00000564091 FEZ1Q99689 392 aa20.53■□□□□ 0.88
CLN3-211ENST00000564091 XRCC5P13010 732 aaKnown RBP20.52■□□□□ 0.88
CLN3-211ENST00000564091 PLCD1P51178 756 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 PDE3AQ14432 1141 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 CERKLQ49MI3 558 aaPredicted RBP20.52■□□□□ 0.88
CLN3-211ENST00000564091 MAP3K21Q5TCX8 1036 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 GPR142Q7Z601 462 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 TTC6Q86TZ1 520 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 CERS3Q8IU89 383 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 ERC1Q8IUD2 1116 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 ACER1Q8TDN7 264 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 RIOK1Q9BRS2 568 aaKnown RBP20.52■□□□□ 0.88
CLN3-211ENST00000564091 EHD4Q9H223 541 aa20.52■□□□□ 0.88
CLN3-211ENST00000564091 CCL14Q16627 93 aa20.51■□□□□ 0.87
CLN3-211ENST00000564091 ABCB5Q2M3G0 1257 aa20.51■□□□□ 0.87
CLN3-211ENST00000564091 PLEKHH3Q7Z736 793 aa20.51■□□□□ 0.87
CLN3-211ENST00000564091 C7orf61Q8IZ16 206 aa20.51■□□□□ 0.87
CLN3-211ENST00000564091 USP6NLQ92738 828 aa20.51■□□□□ 0.87
CLN3-211ENST00000564091 NBPF3Q9H094 633 aa20.51■□□□□ 0.87
CLN3-211ENST00000564091 OGDHLQ9ULD0 1010 aa20.51■□□□□ 0.87
CLN3-211ENST00000564091 ZMYND8Q9ULU4 1186 aaPredicted RBP20.51■□□□□ 0.87
CLN3-211ENST00000564091 MGAMO43451 1857 aa20.51■□□□□ 0.87
CLN3-211ENST00000564091 LOC285556D6RIA3 1793 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L15C9J2P7 530 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L13C9JLJ4 530 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L11C9JVI0 530 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L18D6R9N7 530 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L22D6RA61 530 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L17D6RBQ6 530 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L19D6RCP7 530 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L20D6RJB6 530 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 CNMDO75829 334 aa20.5■□□□□ 0.87
CLN3-211ENST00000564091 ZKSCAN1P17029 563 aaPredicted RBP20.5■□□□□ 0.87
CLN3-211ENST00000564091 CACNB2Q08289 660 aaPredicted RBP20.5■□□□□ 0.87
CLN3-211ENST00000564091 USP17L24Q0WX57 530 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms