RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 VTI1BQ9UEU0 232 aa7.16□□□□□ -1.26
VPS35-205ENST00000563984 U3KQE9 123 aa7.16□□□□□ -1.26
VPS35-205ENST00000563984 LEFTY1O75610 366 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 ZEB1P37275 1124 aaPredicted RBP7.15□□□□□ -1.26
VPS35-205ENST00000563984 PLCL1Q15111 1095 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 MAP3K11Q16584 847 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 TMCO4Q5TGY1 634 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 DIEXFQ68CQ4 756 aaKnown RBP7.15□□□□□ -1.26
VPS35-205ENST00000563984 LRFN4Q6PJG9 635 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 ATG4DQ86TL0 474 aaPredicted RBP7.15□□□□□ -1.26
VPS35-205ENST00000563984 C1QL4Q86Z23 238 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 PLD6Q8N2A8 252 aaKnown RBP7.15□□□□□ -1.26
VPS35-205ENST00000563984 ZNF507Q8TCN5 953 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 BCL7CQ8WUZ0 217 aaPredicted RBP7.15□□□□□ -1.26
VPS35-205ENST00000563984 TMEM40Q8WWA1 233 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 PLPPR2Q96GM1 343 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 DUSP23Q9BVJ7 150 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 MIR1-1HGQ9H1L0 117 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 CLSPNQ9HAW4 1339 aa7.15□□□□□ -1.26
VPS35-205ENST00000563984 CFPP27918 469 aa7.14□□□□□ -1.27
VPS35-205ENST00000563984 WIPI1Q5MNZ9 446 aaPredicted RBP7.14□□□□□ -1.27
VPS35-205ENST00000563984 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.14□□□□□ -1.27
VPS35-205ENST00000563984 LCNL1Q6ZST4 164 aa7.14□□□□□ -1.27
VPS35-205ENST00000563984 SPRED2Q7Z698 418 aa7.14□□□□□ -1.27
VPS35-205ENST00000563984 KRTAP9-8Q9BYQ0 159 aa7.14□□□□□ -1.27
VPS35-205ENST00000563984 MKNK2Q9HBH9 465 aa7.14□□□□□ -1.27
VPS35-205ENST00000563984 PCDHB5Q9Y5E4 795 aa7.14□□□□□ -1.27
VPS35-205ENST00000563984 TACC3Q9Y6A5 838 aa7.14□□□□□ -1.27
VPS35-205ENST00000563984 TFE3P19532 575 aaPredicted RBP7.13□□□□□ -1.27
VPS35-205ENST00000563984 CD96P40200 585 aa7.13□□□□□ -1.27
VPS35-205ENST00000563984 SEPT6Q14141 434 aa7.13□□□□□ -1.27
VPS35-205ENST00000563984 TSNAXIP1Q2TAA8 658 aa7.13□□□□□ -1.27
VPS35-205ENST00000563984 CCDC84Q86UT8 332 aaPredicted RBP7.13□□□□□ -1.27
VPS35-205ENST00000563984 WNT10AQ9GZT5 417 aa7.13□□□□□ -1.27
VPS35-205ENST00000563984 PRAMEF27A3QJZ7 478 aa7.12□□□□□ -1.27
VPS35-205ENST00000563984 ETF1P62495 437 aaKnown RBP7.12□□□□□ -1.27
VPS35-205ENST00000563984 TOP6BLQ8N6T0 577 aa7.12□□□□□ -1.27
VPS35-205ENST00000563984 PHC3Q8NDX5 983 aa7.12□□□□□ -1.27
VPS35-205ENST00000563984 BHLHE22Q8NFJ8 381 aaPredicted RBP7.12□□□□□ -1.27
VPS35-205ENST00000563984 GIPC2Q8TF65 315 aa7.12□□□□□ -1.27
VPS35-205ENST00000563984 FAM84AQ96KN4 292 aa7.12□□□□□ -1.27
VPS35-205ENST00000563984 NAP1L5Q96NT1 182 aaPredicted RBP7.12□□□□□ -1.27
VPS35-205ENST00000563984 RSRP1Q9BUV0 290 aa7.12□□□□□ -1.27
VPS35-205ENST00000563984 PRDM10Q9NQV6 1147 aa7.12□□□□□ -1.27
VPS35-205ENST00000563984 SLC5A6Q9Y289 635 aa7.12□□□□□ -1.27
VPS35-205ENST00000563984 GFRA2O00451 464 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 CAP2P40123 477 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 PWP1Q13610 501 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 UBE3DQ7Z6J8 389 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 RELL1Q8IUW5 271 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 HID1Q8IV36 788 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 STK11IPQ8N1F8 1099 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 NETO1Q8TDF5 533 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 MISP3Q96FF7 219 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 GTF2IRD1Q9UHL9 959 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 TLR6Q9Y2C9 796 aa7.11□□□□□ -1.27
VPS35-205ENST00000563984 LRIG2O94898 1065 aa7.1□□□□□ -1.27
VPS35-205ENST00000563984 CDK8P49336 464 aa7.1□□□□□ -1.27
VPS35-205ENST00000563984 RPL6Q02878 288 aaKnown RBP7.1□□□□□ -1.27
VPS35-205ENST00000563984 ARHGAP27Q6ZUM4 889 aa7.1□□□□□ -1.27
VPS35-205ENST00000563984 TICAM2Q86XR7 235 aa7.1□□□□□ -1.27
VPS35-205ENST00000563984 FOXQ1Q9C009 403 aa7.1□□□□□ -1.27
VPS35-205ENST00000563984 IGF2BP3O00425 579 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS35-205ENST00000563984 CD8BP10966 210 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 ITIH2P19823 946 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 GRK4P32298 578 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 OXCT1P55809 520 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 LMNB2Q03252 620 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 SLBPQ14493 270 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS35-205ENST00000563984 GLIPR1L2Q4G1C9 344 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 ARMCX6Q7L4S7 300 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 FAM214BQ7L5A3 538 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 MFSD2AQ8NA29 543 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 JARID2Q92833 1246 aaPredicted RBP7.09□□□□□ -1.27
VPS35-205ENST00000563984 TMEM74Q96NL1 305 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 TOX2Q96NM4 488 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 FBRSQ9HAH7 460 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 JAG2Q9Y219 1238 aa7.09□□□□□ -1.27
VPS35-205ENST00000563984 CLSTN1O94985 981 aa7.08□□□□□ -1.28
VPS35-205ENST00000563984 CEACAM5P06731 702 aa7.08□□□□□ -1.28
VPS35-205ENST00000563984 PDE4BQ07343 736 aa7.08□□□□□ -1.28
VPS35-205ENST00000563984 CAMK2GQ13555 558 aaPredicted RBP7.08□□□□□ -1.28
VPS35-205ENST00000563984 MRPL58Q14197 206 aaKnown RBP7.08□□□□□ -1.28
VPS35-205ENST00000563984 IFI16Q16666 785 aaKnown RBP7.08□□□□□ -1.28
VPS35-205ENST00000563984 TTLL10Q6ZVT0 673 aa7.08□□□□□ -1.28
VPS35-205ENST00000563984 HEXIM2Q96MH2 286 aaKnown RBP7.08□□□□□ -1.28
VPS35-205ENST00000563984 RC3H2Q9HBD1 1191 aaKnown RBP7.08□□□□□ -1.28
VPS35-205ENST00000563984 RNASE1P07998 156 aaKnown RBP7.07□□□□□ -1.28
VPS35-205ENST00000563984 GBP2P32456 591 aaPredicted RBP7.07□□□□□ -1.28
VPS35-205ENST00000563984 MFAP1P55081 439 aaKnown RBP7.07□□□□□ -1.28
VPS35-205ENST00000563984 NKG7Q16617 165 aa7.07□□□□□ -1.28
VPS35-205ENST00000563984 SIAH1Q8IUQ4 282 aa7.07□□□□□ -1.28
VPS35-205ENST00000563984 GATAD2BQ8WXI9 593 aa7.07□□□□□ -1.28
VPS35-205ENST00000563984 RHOVQ96L33 236 aa7.07□□□□□ -1.28
VPS35-205ENST00000563984 MBNL3Q9NUK0 354 aaKnown RBP7.07□□□□□ -1.28
VPS35-205ENST00000563984 ADAM30Q9UKF2 790 aa7.07□□□□□ -1.28
VPS35-205ENST00000563984 VAV3Q9UKW4 847 aa7.07□□□□□ -1.28
VPS35-205ENST00000563984 SNX11Q9Y5W9 270 aa7.07□□□□□ -1.28
VPS35-205ENST00000563984 TMEM265A0A087WTH1 108 aa7.06□□□□□ -1.28
VPS35-205ENST00000563984 FAM221AA4D161 298 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms