RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 CTDSPL2Q05D32 466 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 PICALMQ13492 652 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 MAP3K11Q16584 847 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 RRP12Q5JTH9 1297 aaKnown RBP7.57□□□□□ -1.2
SPG11-221ENST00000560299 SYNE3Q6ZMZ3 975 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 Q6ZUG5 572 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 STOX1Q6ZVD7 989 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 SULF1Q8IWU6 871 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 ZNF444Q8N0Y2 327 aaPredicted RBP7.57□□□□□ -1.2
SPG11-221ENST00000560299 FBXL16Q8N461 479 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 HOOK2Q96ED9 719 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 TMEM87BQ96K49 555 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 PRMT6Q96LA8 375 aaPredicted RBP7.57□□□□□ -1.2
SPG11-221ENST00000560299 TTC14Q96N46 770 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 UBAC1Q9BSL1 405 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 OSBPL5Q9H0X9 879 aaPredicted RBP7.57□□□□□ -1.2
SPG11-221ENST00000560299 TDRD3Q9H7E2 651 aaKnown RBP7.57□□□□□ -1.2
SPG11-221ENST00000560299 SWAP70Q9UH65 585 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 SAP30BPQ9UHR5 308 aaKnown RBP7.57□□□□□ -1.2
SPG11-221ENST00000560299 ECM29Q5VYK3 1845 aa7.57□□□□□ -1.2
SPG11-221ENST00000560299 MYH1P12882 1939 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 COL2A1P02458 1487 aaPredicted RBP7.56□□□□□ -1.2
SPG11-221ENST00000560299 NAV1Q8NEY1 1877 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 TMEM88BA6NKF7 163 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 B4E1Z4 1266 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 RANBP6O60518 1105 aaKnown RBP7.56□□□□□ -1.2
SPG11-221ENST00000560299 KDM4AO75164 1064 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 FGRP09769 529 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 CPA1P15085 419 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 AK2P54819 239 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 EXOSC10Q01780 885 aaKnown RBP7.56□□□□□ -1.2
SPG11-221ENST00000560299 PPP4R3BQ5MIZ7 849 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 SAMD7Q7Z3H4 446 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 TBC1D10CQ8IV04 446 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 FOXP4Q8IVH2 680 aaPredicted RBP7.56□□□□□ -1.2
SPG11-221ENST00000560299 MB21D2Q8IYB1 491 aaPredicted RBP7.56□□□□□ -1.2
SPG11-221ENST00000560299 STK11IPQ8N1F8 1099 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 CRACR2BQ8N4Y2 399 aaPredicted RBP7.56□□□□□ -1.2
SPG11-221ENST00000560299 DNAJC5GQ8N7S2 189 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 JMYQ8N9B5 988 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 TRPM4Q8TD43 1214 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 CWC22Q9HCG8 908 aaKnown RBP7.56□□□□□ -1.2
SPG11-221ENST00000560299 ZSWIM5Q9P217 1185 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 PI4KBQ9UBF8 816 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 ZNF70Q9UC06 446 aaPredicted RBP7.56□□□□□ -1.2
SPG11-221ENST00000560299 SERPINB13Q9UIV8 391 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 ROBO3Q96MS0 1386 aa7.56□□□□□ -1.2
SPG11-221ENST00000560299 CDK5RAP2Q96SN8 1893 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 FOCADQ5VW36 1801 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 CYP2D7A0A087X1C5 515 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 CCDC69A6NI79 296 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 TSPY2A6NKD2 308 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 IFIT3O14879 490 aaKnown RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 MAP3K13O43283 966 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 DHX16O60231 1041 aaKnown RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 EGFRP00533 1210 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 TSPY3P0CV98 308 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 TSPY8P0CW00 308 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 LIFRP42702 1097 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 MAP3K10Q02779 954 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 TCP10Q12799 353 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 MMRN1Q13201 1228 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 WTAPQ15007 396 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 SUPT20HL1Q3ZLR7 823 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 TBC1D10BQ4KMP7 808 aaPredicted RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 EAPPQ56P03 285 aaPredicted RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 TMEM67Q5HYA8 995 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 RBM26Q5T8P6 1007 aaKnown RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 NFXL1Q6ZNB6 911 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 C16orf86Q6ZW13 317 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 NOL8Q76FK4 1167 aaKnown RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 KRT26Q7Z3Y9 468 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 SLAIN1Q8ND83 568 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 FAM151AQ8WW52 585 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 BRF1Q92994 677 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 TMX3Q96JJ7 454 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 NBPF3Q9H094 633 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 EHD4Q9H223 541 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 SLKQ9H2G2 1235 aaPredicted RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 VEZTQ9HBM0 779 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 NAP1L2Q9ULW6 460 aaPredicted RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 ANGEL1Q9UNK9 670 aaKnown RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.55□□□□□ -1.2
SPG11-221ENST00000560299 TAF6LQ9Y6J9 622 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 LAMB1P07942 1786 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 TRPM7Q96QT4 1865 aa7.55□□□□□ -1.2
SPG11-221ENST00000560299 NEDD4P46934 1319 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 CLRN2A0PK11 232 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 TCP10L2B9ZVM9 353 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 PRDM1O75626 825 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 CYP2D6P10635 497 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 PDIA4P13667 645 aaKnown RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 MAP2K2P36507 400 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 SLC4A3P48751 1232 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 CDK8P49336 464 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 PLCD1P51178 756 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 TFAP4Q01664 338 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 NFIAQ12857 509 aa7.54□□□□□ -1.2
SPG11-221ENST00000560299 TOB2Q14106 344 aaPredicted RBP7.54□□□□□ -1.2
SPG11-221ENST00000560299 NBPF9Q3BBW0 867 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms