RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 JAG2Q9Y219 1238 aa14.78□□□□□ -0.04
LDLR-207ENST00000558013 KLRK1P26718 216 aa14.77□□□□□ -0.04
LDLR-207ENST00000558013 STX17P56962 302 aa14.77□□□□□ -0.04
LDLR-207ENST00000558013 SART3Q15020 963 aaKnown RBP14.77□□□□□ -0.04
LDLR-207ENST00000558013 KLHL10Q6JEL2 608 aa14.77□□□□□ -0.04
LDLR-207ENST00000558013 TMEM139Q8IV31 216 aa14.77□□□□□ -0.04
LDLR-207ENST00000558013 CCDC24Q8N4L8 307 aa14.77□□□□□ -0.04
LDLR-207ENST00000558013 ENAHQ8N8S7 591 aaPredicted RBP14.77□□□□□ -0.04
LDLR-207ENST00000558013 DHX58Q96C10 678 aa14.77□□□□□ -0.04
LDLR-207ENST00000558013 ERO1AQ96HE7 468 aa14.77□□□□□ -0.04
LDLR-207ENST00000558013 V9GY48 417 aaPredicted RBP14.77□□□□□ -0.04
LDLR-207ENST00000558013 STK36Q9NRP7 1315 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 PSDA5PKW4 1024 aaPredicted RBP14.77□□□□□ -0.05
LDLR-207ENST00000558013 ADAMTS2O95450 1211 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 NTSR2O95665 410 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 BICDL1Q6ZP65 573 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 REXO1L1PQ8IX06 675 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 OGFRQ9NZT2 677 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 DEXIO95424 95 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 CDK11BP21127 795 aaKnown RBP14.77□□□□□ -0.05
LDLR-207ENST00000558013 SEC23AQ15436 765 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 PKN1Q16512 942 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 CCDC152Q4G0S7 254 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 CCDC93Q567U6 631 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 L2HGDHQ9H9P8 463 aa14.77□□□□□ -0.05
LDLR-207ENST00000558013 DISP2A7MBM2 1401 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 KCNQ2O43526 872 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 ACTN4O43707 911 aaKnown RBP14.76□□□□□ -0.05
LDLR-207ENST00000558013 ETF1P62495 437 aaKnown RBP14.76□□□□□ -0.05
LDLR-207ENST00000558013 TOGARAM2Q6ZUX3 1019 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 SLC51AQ86UW1 340 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 FEZ1Q99689 392 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 DESI2Q9BSY9 194 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 FOXP1Q9H334 677 aaPredicted RBP14.76□□□□□ -0.05
LDLR-207ENST00000558013 PNPLA7Q6ZV29 1317 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 LOC102724428A0A0B4J2F2 783 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 SIK1P57059 783 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 RILPL1Q5EBL4 403 aa14.76□□□□□ -0.05
LDLR-207ENST00000558013 MAGEB6P1A0A0J9YX57 407 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 MTF1Q14872 753 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 ZNF397Q8NF99 534 aaPredicted RBP14.75□□□□□ -0.05
LDLR-207ENST00000558013 WASF1Q92558 559 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 SMARCE1Q969G3 411 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 A0A0U1RQJ8 604 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 TEX33O43247 280 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 CD44P16070 742 aaKnown RBP14.75□□□□□ -0.05
LDLR-207ENST00000558013 SARSP49591 514 aaKnown RBP14.75□□□□□ -0.05
LDLR-207ENST00000558013 ATRIPQ8WXE1 791 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 WDR24Q96S15 920 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 COL1A1P02452 1464 aaPredicted RBP14.75□□□□□ -0.05
LDLR-207ENST00000558013 URI1O94763 535 aaPredicted RBP14.75□□□□□ -0.05
LDLR-207ENST00000558013 MORC3Q14149 939 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 ZNF174Q15697 407 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 ERFEQ4G0M1 354 aa14.75□□□□□ -0.05
LDLR-207ENST00000558013 RIOK1Q9BRS2 568 aaKnown RBP14.75□□□□□ -0.05
LDLR-207ENST00000558013 IRX2Q9BZI1 471 aaPredicted RBP14.75□□□□□ -0.05
LDLR-207ENST00000558013 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.75□□□□□ -0.058e-8■■□□□ 11.7
LDLR-207ENST00000558013 SRPRBQ9Y5M8 271 aaKnown RBP14.75□□□□□ -0.05
LDLR-207ENST00000558013 VWA3AA6NCI4 1184 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 ZNF18P17022 549 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 TC2NQ8N9U0 490 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 TAF1P21675 1872 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 CBFA2T2O43439 604 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 GNAT2P19087 354 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 FUT2Q10981 343 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 FAM47AQ5JRC9 791 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 MARCH10Q8NA82 808 aaPredicted RBP14.74□□□□□ -0.05
LDLR-207ENST00000558013 CPLX3Q8WVH0 158 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 PPP2R2CQ9Y2T4 447 aa14.74□□□□□ -0.05
LDLR-207ENST00000558013 ANKRD36CQ5JPF3 1778 aa14.73□□□□□ -0.05
LDLR-207ENST00000558013 USP17L12C9JPN9 530 aa14.73□□□□□ -0.05
LDLR-207ENST00000558013 USP17L21D6R901 530 aa14.73□□□□□ -0.05
LDLR-207ENST00000558013 ARHGAP29Q52LW3 1261 aa14.73□□□□□ -0.05
LDLR-207ENST00000558013 ESR2Q92731 530 aa14.73□□□□□ -0.05
LDLR-207ENST00000558013 SYMPKQ92797 1274 aaKnown RBP14.73□□□□□ -0.05
LDLR-207ENST00000558013 ZSCAN10Q96SZ4 725 aaPredicted RBP14.73□□□□□ -0.05
LDLR-207ENST00000558013 MORC2Q9Y6X9 1032 aaPredicted RBP14.73□□□□□ -0.05
LDLR-207ENST00000558013 CYP2D6P10635 497 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 CDC25AP30304 524 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 TBX2Q13207 712 aaPredicted RBP14.72□□□□□ -0.05
LDLR-207ENST00000558013 CELF1Q92879 486 aaKnown RBP14.72□□□□□ -0.05
LDLR-207ENST00000558013 BAG1Q99933 345 aaPredicted RBP14.72□□□□□ -0.05
LDLR-207ENST00000558013 CARD6Q9BX69 1037 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 CCDC196A0A1B0GTZ2 297 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 KIF2AO00139 706 aaPredicted RBP14.72□□□□□ -0.05
LDLR-207ENST00000558013 NRDCO43847 1150 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 IFIT1BQ5T764 474 aaKnown RBP14.72□□□□□ -0.05
LDLR-207ENST00000558013 NT5DC1Q5TFE4 455 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 ZBTB9Q96C00 473 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 RNF41Q9H4P4 317 aaPredicted RBP14.72□□□□□ -0.05
LDLR-207ENST00000558013 LRP5O75197 1615 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 TRIM75PA6NK02 468 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 AKAP17AQ02040 695 aaKnown RBP14.72□□□□□ -0.05
LDLR-207ENST00000558013 KARSQ15046 597 aaKnown RBP14.72□□□□□ -0.05
LDLR-207ENST00000558013 NPY5RQ15761 445 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 DDB1Q16531 1140 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 RGS22Q8NE09 1264 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 BLZF1Q9H2G9 400 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 TFCP2L1Q9NZI6 479 aa14.72□□□□□ -0.05
LDLR-207ENST00000558013 CHD4Q14839 1912 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms