RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 ZAP70P43403 619 aa22.41■■□□□ 1.18
VIPAS39-209ENST00000556909 IRX3P78415 501 aaPredicted RBP22.41■■□□□ 1.18
VIPAS39-209ENST00000556909 CRACR2BQ8N4Y2 399 aaPredicted RBP22.41■■□□□ 1.18
VIPAS39-209ENST00000556909 PIH1D3Q9NQM4 214 aaKnown RBP22.41■■□□□ 1.18
VIPAS39-209ENST00000556909 DBNLQ9UJU6 430 aaKnown RBP22.41■■□□□ 1.18
VIPAS39-209ENST00000556909 PALD1Q9ULE6 856 aa22.41■■□□□ 1.18
VIPAS39-209ENST00000556909 GDF11O95390 407 aa22.4■■□□□ 1.18
VIPAS39-209ENST00000556909 TRIM34Q9BYJ4 488 aa22.4■■□□□ 1.18
VIPAS39-209ENST00000556909 TLR7Q9NYK1 1049 aaKnown RBP22.4■■□□□ 1.18
VIPAS39-209ENST00000556909 TMOD4Q9NZQ9 345 aa22.4■■□□□ 1.18
VIPAS39-209ENST00000556909 ZBTB21Q9ULJ3 1066 aa22.4■■□□□ 1.18
VIPAS39-209ENST00000556909 NOP58Q9Y2X3 529 aaKnown RBP22.4■■□□□ 1.18
VIPAS39-209ENST00000556909 LAMA3Q16787 3333 aa22.39■■□□□ 1.18
VIPAS39-209ENST00000556909 EVI5O60447 810 aa22.39■■□□□ 1.17
VIPAS39-209ENST00000556909 IGSF3O75054 1194 aa22.39■■□□□ 1.17
VIPAS39-209ENST00000556909 HOXA7P31268 230 aaPredicted RBP22.39■■□□□ 1.17
VIPAS39-209ENST00000556909 FOXP4Q8IVH2 680 aaPredicted RBP22.39■■□□□ 1.17
VIPAS39-209ENST00000556909 DIS3LQ8TF46 1054 aaKnown RBP22.39■■□□□ 1.17
VIPAS39-209ENST00000556909 PAWRQ96IZ0 340 aaKnown RBP22.39■■□□□ 1.17
VIPAS39-209ENST00000556909 GINM1Q9NU53 330 aa22.39■■□□□ 1.17
VIPAS39-209ENST00000556909 SAP30BPQ9UHR5 308 aaKnown RBP22.39■■□□□ 1.17
VIPAS39-209ENST00000556909 PEX10O60683 326 aa22.38■■□□□ 1.17
VIPAS39-209ENST00000556909 DYNLL1P63167 89 aaKnown RBP22.38■■□□□ 1.17
VIPAS39-209ENST00000556909 TRIM32Q13049 653 aa22.38■■□□□ 1.17
VIPAS39-209ENST00000556909 FTSJ3Q8IY81 847 aaKnown RBP22.38■■□□□ 1.17
VIPAS39-209ENST00000556909 P2RX7Q99572 595 aaKnown RBP22.38■■□□□ 1.17
VIPAS39-209ENST00000556909 NAV1Q8NEY1 1877 aa22.38■■□□□ 1.17
VIPAS39-209ENST00000556909 C19orf81C9J6K1 198 aa22.37■■□□□ 1.17
VIPAS39-209ENST00000556909 USP17L10C9JJH3 530 aa22.37■■□□□ 1.17
VIPAS39-209ENST00000556909 HERVK_113P62684 666 aa22.37■■□□□ 1.17
VIPAS39-209ENST00000556909 ITPRIPQ8IWB1 547 aa22.37■■□□□ 1.17
VIPAS39-209ENST00000556909 TRIB2Q92519 343 aa22.37■■□□□ 1.17
VIPAS39-209ENST00000556909 TXNRD2Q9NNW7 524 aa22.37■■□□□ 1.17
VIPAS39-209ENST00000556909 FRMPD3Q5JV73 1810 aa22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 RPTORQ8N122 1335 aa22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 HLA-DOAP06340 250 aa22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 RLBP1P12271 317 aa22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 CYP7A1P22680 504 aa22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 NECAB2Q7Z6G3 386 aa22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 ANKLE1Q8NAG6 615 aa22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 EAF2Q96CJ1 260 aaPredicted RBP22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 CCDC8Q9H0W5 538 aaPredicted RBP22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 HMX1Q9NP08 348 aaPredicted RBP22.36■■□□□ 1.17
VIPAS39-209ENST00000556909 IDH1O75874 414 aaKnown RBP22.35■■□□□ 1.17
VIPAS39-209ENST00000556909 MIGA1Q8NAN2 632 aa22.35■■□□□ 1.17
VIPAS39-209ENST00000556909 GPRC5AQ8NFJ5 357 aa22.35■■□□□ 1.17
VIPAS39-209ENST00000556909 SOCS4Q8WXH5 440 aa22.35■■□□□ 1.17
VIPAS39-209ENST00000556909 CYP2B6P20813 491 aa22.34■■□□□ 1.17
VIPAS39-209ENST00000556909 EMILIN3Q9NT22 766 aa22.34■■□□□ 1.17
VIPAS39-209ENST00000556909 A0A1W2PPC1 479 aa22.33■■□□□ 1.17
VIPAS39-209ENST00000556909 GH2P01242 217 aa22.33■■□□□ 1.17
VIPAS39-209ENST00000556909 MAP3K21Q5TCX8 1036 aa22.33■■□□□ 1.17
VIPAS39-209ENST00000556909 MAGEB6Q8N7X4 407 aa22.33■■□□□ 1.17
VIPAS39-209ENST00000556909 NUDT12Q9BQG2 462 aa22.33■■□□□ 1.17
VIPAS39-209ENST00000556909 RBPJLQ9UBG7 517 aa22.33■■□□□ 1.17
VIPAS39-209ENST00000556909 NDUFB9Q9Y6M9 179 aa22.33■■□□□ 1.17
VIPAS39-209ENST00000556909 PRKAR2AP13861 404 aaKnown RBP22.32■■□□□ 1.16
VIPAS39-209ENST00000556909 MNX1P50219 401 aaPredicted RBP22.32■■□□□ 1.16
VIPAS39-209ENST00000556909 ERVK-9P63128 1117 aa22.32■■□□□ 1.16
VIPAS39-209ENST00000556909 ERVK-24P63145 666 aa22.32■■□□□ 1.16
VIPAS39-209ENST00000556909 CEP85Q6P2H3 762 aa22.32■■□□□ 1.16
VIPAS39-209ENST00000556909 USP17L2Q6R6M4 530 aa22.32■■□□□ 1.16
VIPAS39-209ENST00000556909 CERS3Q8IU89 383 aa22.32■■□□□ 1.16
VIPAS39-209ENST00000556909 GTF3C2Q8WUA4 911 aaPredicted RBP22.32■■□□□ 1.16
VIPAS39-209ENST00000556909 XRCC5P13010 732 aaKnown RBP22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 MAPK4P31152 587 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 USP5P45974 858 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 PDE3AQ14432 1141 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 TATDN1Q6P1N9 297 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 POTEEQ6S8J3 1075 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 PAGR1Q9BTK6 254 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 NBPF3Q9H094 633 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 EHD4Q9H223 541 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 PORCNQ9H237 461 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 ANTXR1Q9H6X2 564 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 STAP2Q9UGK3 403 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 OGDHLQ9ULD0 1010 aa22.31■■□□□ 1.16
VIPAS39-209ENST00000556909 MYH8P13535 1937 aa22.3■■□□□ 1.16
VIPAS39-209ENST00000556909 HNRNPUQ00839 825 aaKnown RBP eCLIP22.3■■□□□ 1.16
VIPAS39-209ENST00000556909 Q3C1V9 767 aa22.3■■□□□ 1.16
VIPAS39-209ENST00000556909 C7orf61Q8IZ16 206 aa22.3■■□□□ 1.16
VIPAS39-209ENST00000556909 USP6NLQ92738 828 aa22.3■■□□□ 1.16
VIPAS39-209ENST00000556909 C12orf42Q96LP6 360 aa22.3■■□□□ 1.16
VIPAS39-209ENST00000556909 FEZ1Q99689 392 aa22.3■■□□□ 1.16
VIPAS39-209ENST00000556909 SERPINB13Q9UIV8 391 aa22.3■■□□□ 1.16
VIPAS39-209ENST00000556909 ZKSCAN1P17029 563 aaPredicted RBP22.29■■□□□ 1.16
VIPAS39-209ENST00000556909 MAP3K12Q12852 859 aa22.29■■□□□ 1.16
VIPAS39-209ENST00000556909 ZYXQ15942 572 aaKnown RBP22.29■■□□□ 1.16
VIPAS39-209ENST00000556909 GPR142Q7Z601 462 aa22.29■■□□□ 1.16
VIPAS39-209ENST00000556909 C11orf49Q9H6J7 331 aa22.29■■□□□ 1.16
VIPAS39-209ENST00000556909 EXOC6BQ9Y2D4 811 aa22.29■■□□□ 1.16
VIPAS39-209ENST00000556909 SOX1O00570 391 aaPredicted RBP22.28■■□□□ 1.16
VIPAS39-209ENST00000556909 MORN1Q5T089 497 aa22.28■■□□□ 1.16
VIPAS39-209ENST00000556909 AACSQ86V21 672 aa22.28■■□□□ 1.16
VIPAS39-209ENST00000556909 ERC1Q8IUD2 1116 aa22.28■■□□□ 1.16
VIPAS39-209ENST00000556909 CCAR1Q8IX12 1150 aaKnown RBP22.28■■□□□ 1.16
VIPAS39-209ENST00000556909 TRMT44Q8IYL2 757 aaKnown RBP22.28■■□□□ 1.16
VIPAS39-209ENST00000556909 RGS2P41220 211 aa22.27■■□□□ 1.16
VIPAS39-209ENST00000556909 RAB3GAP1Q15042 981 aa22.27■■□□□ 1.16
VIPAS39-209ENST00000556909 CCL14Q16627 93 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms