RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 TDHQ8IZJ6 230 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 TGFBRAP1Q8WUH2 860 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 TXNRD2Q9NNW7 524 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 GINM1Q9NU53 330 aa15.57■□□□□ 0.08
SHMT2-223ENST00000556689 PTPRFP10586 1907 aa15.56■□□□□ 0.08
SHMT2-223ENST00000556689 PEX10O60683 326 aa15.56■□□□□ 0.08
SHMT2-223ENST00000556689 RARSP54136 660 aaKnown RBP15.56■□□□□ 0.08
SHMT2-223ENST00000556689 PPP4CP60510 307 aa15.56■□□□□ 0.08
SHMT2-223ENST00000556689 Q3C1V9 767 aa15.56■□□□□ 0.08
SHMT2-223ENST00000556689 METTL16Q86W50 562 aaKnown RBP15.56■□□□□ 0.08
SHMT2-223ENST00000556689 CRACR2BQ8N4Y2 399 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-223ENST00000556689 TRIM34Q9BYJ4 488 aa15.56■□□□□ 0.08
SHMT2-223ENST00000556689 UBE2OQ9C0C9 1292 aaKnown RBP15.56■□□□□ 0.08
SHMT2-223ENST00000556689 AATFQ9NY61 560 aaKnown RBP eCLIP15.56■□□□□ 0.08
SHMT2-223ENST00000556689 RBPJLQ9UBG7 517 aa15.56■□□□□ 0.08
SHMT2-223ENST00000556689 GNAI2P04899 355 aa15.55■□□□□ 0.08
SHMT2-223ENST00000556689 ZKSCAN1P17029 563 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-223ENST00000556689 JAG1P78504 1218 aa15.55■□□□□ 0.08
SHMT2-223ENST00000556689 CACNB2Q08289 660 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-223ENST00000556689 Q7L0L9 218 aa15.55■□□□□ 0.08
SHMT2-223ENST00000556689 MAPKAPK5Q8IW41 473 aa15.55■□□□□ 0.08
SHMT2-223ENST00000556689 GTF3C2Q8WUA4 911 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-223ENST00000556689 STXBP5LQ9Y2K9 1186 aa15.55■□□□□ 0.08
SHMT2-223ENST00000556689 PFASO15067 1338 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 RGS2P41220 211 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 ERVK-9P63128 1117 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 ERVK-24P63145 666 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 LHX8Q68G74 356 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 USP6NLQ92738 828 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 SNRKQ9NRH2 765 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 MTMR10Q9NXD2 777 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 PALD1Q9ULE6 856 aa15.54■□□□□ 0.08
SHMT2-223ENST00000556689 IPO8O15397 1037 aaKnown RBP15.53■□□□□ 0.08
SHMT2-223ENST00000556689 GDF11O95390 407 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 COL6A1P12109 1028 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 CCDC158Q5M9N0 1113 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 TTC39AQ5SRH9 613 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 MORN1Q5T089 497 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 USP17L2Q6R6M4 530 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 GPR142Q7Z601 462 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 PLEKHH3Q7Z736 793 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 PAGR1Q9BTK6 254 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 PORCNQ9H237 461 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 DNAJC18Q9H819 358 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 EMILIN3Q9NT22 766 aa15.53■□□□□ 0.08
SHMT2-223ENST00000556689 FLT1P17948 1338 aa15.52■□□□□ 0.08
SHMT2-223ENST00000556689 PNMA6EA0A0J9YXQ4 647 aa15.52■□□□□ 0.08
SHMT2-223ENST00000556689 HLA-DOAP06340 250 aa15.52■□□□□ 0.08
SHMT2-223ENST00000556689 CCND3P30281 292 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-223ENST00000556689 CCL14Q16627 93 aa15.52■□□□□ 0.08
SHMT2-223ENST00000556689 LRRC26Q2I0M4 334 aa15.52■□□□□ 0.08
SHMT2-223ENST00000556689 SHROOM1Q2M3G4 852 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-223ENST00000556689 ATF7IPQ6VMQ6 1270 aa15.52■□□□□ 0.08
SHMT2-223ENST00000556689 CWC22Q9HCG8 908 aaKnown RBP15.52■□□□□ 0.08
SHMT2-223ENST00000556689 GPR108Q9NPR9 543 aa15.52■□□□□ 0.08
SHMT2-223ENST00000556689 ZBTB21Q9ULJ3 1066 aa15.52■□□□□ 0.08
SHMT2-223ENST00000556689 LOC285556D6RIA3 1793 aa15.52■□□□□ 0.07
SHMT2-223ENST00000556689 IGSF3O75054 1194 aa15.51■□□□□ 0.07
SHMT2-223ENST00000556689 GLRX3O76003 335 aaKnown RBP15.51■□□□□ 0.07
SHMT2-223ENST00000556689 CYP2E1P05181 493 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-223ENST00000556689 ADGRA1Q86SQ6 560 aa15.51■□□□□ 0.07
SHMT2-223ENST00000556689 EDC3Q96F86 508 aaKnown RBP15.51■□□□□ 0.07
SHMT2-223ENST00000556689 SAP30BPQ9UHR5 308 aaKnown RBP15.51■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L15C9J2P7 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L13C9JLJ4 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L11C9JVI0 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L18D6R9N7 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L22D6RA61 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L17D6RBQ6 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L19D6RCP7 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L20D6RJB6 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 CCNA1P78396 465 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 MDM2Q00987 491 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-223ENST00000556689 USP17L24Q0WX57 530 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 MAP2K5Q13163 448 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 MFSD14CQ5VZR4 134 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 POTEEQ6S8J3 1075 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 APBA2Q99767 749 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 RABGAP1Q9Y3P9 1069 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 ALPK3Q96L96 1907 aa15.5■□□□□ 0.07
SHMT2-223ENST00000556689 GH2P01242 217 aa15.49■□□□□ 0.07
SHMT2-223ENST00000556689 TNNI3KQ59H18 835 aa15.49■□□□□ 0.07
SHMT2-223ENST00000556689 ZNF512BQ96KM6 892 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-223ENST00000556689 LBHD1Q9BQE6 289 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-223ENST00000556689 DBNDD2Q9BQY9 259 aa15.49■□□□□ 0.07
SHMT2-223ENST00000556689 FPGT-TNNI3KV9GXZ4 949 aa15.49■□□□□ 0.07
SHMT2-223ENST00000556689 TRIM27P14373 513 aa15.48■□□□□ 0.07
SHMT2-223ENST00000556689 CYP7A1P22680 504 aa15.48■□□□□ 0.07
SHMT2-223ENST00000556689 ZAP70P43403 619 aa15.48■□□□□ 0.07
SHMT2-223ENST00000556689 DYNLL1P63167 89 aaKnown RBP15.48■□□□□ 0.07
SHMT2-223ENST00000556689 OS9Q13438 667 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-223ENST00000556689 ZYXQ15942 572 aaKnown RBP15.48■□□□□ 0.07
SHMT2-223ENST00000556689 TATDN1Q6P1N9 297 aa15.48■□□□□ 0.07
SHMT2-223ENST00000556689 CATSPERGQ6ZRH7 1159 aa15.48■□□□□ 0.07
SHMT2-223ENST00000556689 FRAT1Q92837 279 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-223ENST00000556689 C12orf42Q96LP6 360 aa15.48■□□□□ 0.07
SHMT2-223ENST00000556689 FEZ1Q99689 392 aa15.48■□□□□ 0.07
SHMT2-223ENST00000556689 SENP6Q9GZR1 1112 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-223ENST00000556689 PLXNB2O15031 1838 aa15.47■□□□□ 0.07
SHMT2-223ENST00000556689 SLC15A5A6NIM6 579 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms