RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 Q8N3U1 123 aa6.25□□□□□ -1.41
VTI1B-202ENST00000553619 ZNF280CQ8ND82 737 aa6.25□□□□□ -1.41
VTI1B-202ENST00000553619 ZNF417Q8TAU3 575 aa6.25□□□□□ -1.41
VTI1B-202ENST00000553619 TNFRSF25Q93038 417 aa6.25□□□□□ -1.41
VTI1B-202ENST00000553619 ZNF587Q96SQ5 575 aaPredicted RBP6.25□□□□□ -1.41
VTI1B-202ENST00000553619 BRD7Q9NPI1 651 aa6.25□□□□□ -1.41
VTI1B-202ENST00000553619 ZBTB40Q9NUA8 1239 aa6.25□□□□□ -1.41
VTI1B-202ENST00000553619 C9orf78Q9NZ63 289 aaPredicted RBP6.25□□□□□ -1.41
VTI1B-202ENST00000553619 ANKIB1Q9P2G1 1089 aa6.25□□□□□ -1.41
VTI1B-202ENST00000553619 CCNL1Q9UK58 526 aaPredicted RBP6.25□□□□□ -1.41
VTI1B-202ENST00000553619 KCPQ6ZWJ8 1503 aa6.25□□□□□ -1.41
VTI1B-202ENST00000553619 LAMB4A4D0S4 1761 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 ZNF831Q5JPB2 1677 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 NHSQ6T4R5 1651 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 IBTKQ9P2D0 1353 aaPredicted RBP6.24□□□□□ -1.41
VTI1B-202ENST00000553619 F6X3S4 739 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 FAM229AH3BQW9 127 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 C21orf2O43822 256 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 PPP1R12BO60237 982 aaPredicted RBP6.24□□□□□ -1.41
VTI1B-202ENST00000553619 HMMRO75330 724 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 DKK1O94907 266 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 GNAI2P04899 355 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 UBTFL1P0CB47 393 aaPredicted RBP6.24□□□□□ -1.41
VTI1B-202ENST00000553619 HSP90B1P14625 803 aaKnown RBP6.24□□□□□ -1.41
VTI1B-202ENST00000553619 ADH7P40394 386 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 CRKLP46109 303 aaKnown RBP6.24□□□□□ -1.41
VTI1B-202ENST00000553619 BEND3Q5T5X7 828 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 CLEC4GQ6UXB4 293 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 SIX5Q8N196 739 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 CCDC191Q8NCU4 936 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 FLAD1Q8NFF5 587 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 CEP63Q96MT8 703 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 ZNF652Q9Y2D9 606 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 RTCBQ9Y3I0 505 aaKnown RBP6.24□□□□□ -1.41
VTI1B-202ENST00000553619 MAP3K15Q6ZN16 1313 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 CNTNAP4Q9C0A0 1308 aa6.24□□□□□ -1.41
VTI1B-202ENST00000553619 PXDNLA1KZ92 1463 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 BTAF1O14981 1849 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 A6NJR5 290 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 GATA4P43694 442 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 EIF5P55010 431 aaKnown RBP6.23□□□□□ -1.41
VTI1B-202ENST00000553619 SEC13P55735 322 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 TRIM28Q13263 835 aaKnown RBP6.23□□□□□ -1.41
VTI1B-202ENST00000553619 TCIRG1Q13488 830 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 PROSER3Q2NL68 480 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 TRAPPC3LQ5T215 181 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 INTS5Q6P9B9 1019 aaKnown RBP6.23□□□□□ -1.41
VTI1B-202ENST00000553619 CENPQQ7L2Z9 268 aaPredicted RBP6.23□□□□□ -1.41
VTI1B-202ENST00000553619 LRP10Q7Z4F1 713 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 MICALL1Q8N3F8 863 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 SUSD3Q96L08 255 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 MYD88Q99836 296 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 SEMA6BQ9H3T3 888 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 TFIP11Q9UBB9 837 aaKnown RBP6.23□□□□□ -1.41
VTI1B-202ENST00000553619 TNNQ9UQP3 1299 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 MAFBQ9Y5Q3 323 aaPredicted RBP6.23□□□□□ -1.41
VTI1B-202ENST00000553619 ATP10DQ9P241 1426 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 C5P01031 1676 aa6.23□□□□□ -1.41
VTI1B-202ENST00000553619 SPDYE3A6NKU9 549 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 NID1P14543 1247 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 PIP4K2AP48426 406 aaPredicted RBP6.22□□□□□ -1.41
VTI1B-202ENST00000553619 KCNQ4P56696 695 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 ATP8B2P98198 1209 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 HDAC1Q13547 482 aaPredicted RBP6.22□□□□□ -1.41
VTI1B-202ENST00000553619 ITPK1Q13572 414 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 TXNRD1Q16881 649 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 PARP10Q53GL7 1025 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 PRRT3Q5FWE3 981 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 B4GALNT3Q6L9W6 998 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 TTLL7Q6ZT98 887 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 PPP1R42Q7Z4L9 355 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 GCC1Q96CN9 775 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 HINFPQ9BQA5 517 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 USP44Q9H0E7 712 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 PRDM6Q9NQX0 595 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 CWC25Q9NXE8 425 aaPredicted RBP6.22□□□□□ -1.41
VTI1B-202ENST00000553619 KCNH4Q9UQ05 1017 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 ZBTB1Q9Y2K1 713 aa6.22□□□□□ -1.41
VTI1B-202ENST00000553619 ADCY9O60503 1353 aa6.21□□□□□ -1.41
VTI1B-202ENST00000553619 GRM8O00222 908 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 RFC4P35249 363 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 GCKRQ14397 625 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 HSP90AB4PQ58FF6 505 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 ANKRD44Q8N8A2 993 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 LINC00116Q8NCU8 138 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 BHMTQ93088 406 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 VTI1AQ96AJ9 217 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 NARFQ9UHQ1 456 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 RGS12O14924 1447 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 UTYO14607 1347 aa6.21□□□□□ -1.42
VTI1B-202ENST00000553619 CICQ96RK0 1608 aaPredicted RBP6.21□□□□□ -1.42
VTI1B-202ENST00000553619 LY75O60449 1722 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 PCCAP05165 728 aaPredicted RBP6.2□□□□□ -1.42
VTI1B-202ENST00000553619 IGKV5-2P06315 115 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 SSFA2P28290 1259 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 LMOD1P29536 600 aaPredicted RBP6.2□□□□□ -1.42
VTI1B-202ENST00000553619 TBC1D8BQ0IIM8 1120 aa6.2□□□□□ -1.42
VTI1B-202ENST00000553619 RSPO4Q2I0M5 234 aaPredicted RBP6.2□□□□□ -1.42
VTI1B-202ENST00000553619 CWF19L2Q2TBE0 894 aaKnown RBP6.2□□□□□ -1.42
VTI1B-202ENST00000553619 C20orf204Q6ZNR8 217 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms