RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 MYCNP04198 464 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 NBPF7P0C2Y1 421 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 MAP2K5Q13163 448 aa19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 MTMR2Q13614 643 aa19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 AKNAD1Q5T1N1 836 aa19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 IL27Q8NEV9 243 aa19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 FERMT2Q96AC1 680 aa19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 BICC1Q9H694 974 aaKnown RBP19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 RLFQ13129 1914 aa19.33■□□□□ 0.68
CLSTN3-216ENST00000545663 KIF16BQ96L93 1317 aa19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 USP17L5A8MUK1 530 aa19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 TBC1D12O60347 775 aa19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 HOXA7P31268 230 aaPredicted RBP19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 PBX2P40425 430 aa19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 ADCYAP1R1P41586 468 aa19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 TLE2Q04725 743 aa19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 SNX17Q15036 470 aa19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 GAS2L1Q99501 681 aaPredicted RBP19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 OSBPL5Q9H0X9 879 aaPredicted RBP19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 MUC6Q6W4X9 2439 aa19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 TCF20Q9UGU0 1960 aaKnown RBP19.32■□□□□ 0.68
CLSTN3-216ENST00000545663 GRXCR1A8MXD5 290 aa19.31■□□□□ 0.68
CLSTN3-216ENST00000545663 BMP1P13497 986 aa19.31■□□□□ 0.68
CLSTN3-216ENST00000545663 CAP2P40123 477 aa19.31■□□□□ 0.68
CLSTN3-216ENST00000545663 JAG1P78504 1218 aa19.31■□□□□ 0.68
CLSTN3-216ENST00000545663 ANKRD44Q8N8A2 993 aa19.31■□□□□ 0.68
CLSTN3-216ENST00000545663 UTYO14607 1347 aa19.3■□□□□ 0.68
CLSTN3-216ENST00000545663 GAKO14976 1311 aa19.3■□□□□ 0.68
CLSTN3-216ENST00000545663 MSCO60682 206 aa19.3■□□□□ 0.68
CLSTN3-216ENST00000545663 ARRDC4Q8NCT1 418 aa19.3■□□□□ 0.68
CLSTN3-216ENST00000545663 SNX27Q96L92 541 aa19.3■□□□□ 0.68
CLSTN3-216ENST00000545663 IGFBP4P22692 258 aa19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 BACE1P56817 501 aa19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 ATP2B2Q01814 1243 aa19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 TFF2Q03403 129 aa19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 SHROOM1Q2M3G4 852 aaPredicted RBP19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 SLC4A10Q6U841 1118 aa19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 NPLOC4Q8TAT6 608 aa19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 CWC22Q9HCG8 908 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 TMOD4Q9NZQ9 345 aa19.29■□□□□ 0.68
CLSTN3-216ENST00000545663 KBTBD13C9JR72 458 aa19.28■□□□□ 0.68
CLSTN3-216ENST00000545663 VAMP4O75379 141 aa19.28■□□□□ 0.68
CLSTN3-216ENST00000545663 SLC5A1P13866 664 aa19.28■□□□□ 0.68
CLSTN3-216ENST00000545663 BTDP43251 543 aa19.28■□□□□ 0.68
CLSTN3-216ENST00000545663 RABL6Q3YEC7 729 aaPredicted RBP19.28■□□□□ 0.68
CLSTN3-216ENST00000545663 LPIN2Q92539 896 aa19.28■□□□□ 0.68
CLSTN3-216ENST00000545663 CNMDO75829 334 aa19.27■□□□□ 0.68
CLSTN3-216ENST00000545663 WDR78Q5VTH9 848 aa19.27■□□□□ 0.68
CLSTN3-216ENST00000545663 WDR18Q9BV38 432 aa19.27■□□□□ 0.68
CLSTN3-216ENST00000545663 PBX4Q9BYU1 374 aa19.27■□□□□ 0.68
CLSTN3-216ENST00000545663 TBC1D2Q9BYX2 928 aa19.27■□□□□ 0.68
CLSTN3-216ENST00000545663 AS3MTQ9HBK9 375 aa19.27■□□□□ 0.68
CLSTN3-216ENST00000545663 TACC3Q9Y6A5 838 aa19.27■□□□□ 0.68
CLSTN3-216ENST00000545663 MYO9BQ13459 2157 aa19.27■□□□□ 0.68
CLSTN3-216ENST00000545663 SALL1Q9NSC2 1324 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 MYH13Q9UKX3 1938 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 ALDH1L1O75891 902 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 CYBAP13498 195 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 RAG1P15918 1043 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 KCNQ1P51787 676 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 RHBDL3P58872 404 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 FPGSQ05932 587 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 SRCIN1Q9C0H9 1055 aa19.26■□□□□ 0.67
CLSTN3-216ENST00000545663 MYH2Q9UKX2 1941 aa19.25■□□□□ 0.67
CLSTN3-216ENST00000545663 IGHA2P01877 340 aa19.25■□□□□ 0.67
CLSTN3-216ENST00000545663 CLTBP09497 229 aa19.25■□□□□ 0.67
CLSTN3-216ENST00000545663 PTPREP23469 700 aa19.25■□□□□ 0.67
CLSTN3-216ENST00000545663 NCBP3Q53F19 620 aaKnown RBP19.25■□□□□ 0.67
CLSTN3-216ENST00000545663 TMEM31Q5JXX7 168 aa19.25■□□□□ 0.67
CLSTN3-216ENST00000545663 ATAD5Q96QE3 1844 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 FAM86C2PA6NEL3 165 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 SLC15A5A6NIM6 579 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 KIAA0355O15063 1070 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 PHKA1P46020 1223 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 LRRC41Q15345 812 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 C1orf53Q5VUE5 145 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 CCDC129Q6ZRS4 1044 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 DZIP1Q86YF9 867 aaKnown RBP19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.24■□□□□ 0.672e-7■■■□□ 15.3
CLSTN3-216ENST00000545663 C11orf16Q9NQ32 467 aa19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 CXXC1Q9P0U4 656 aaPredicted RBP19.24■□□□□ 0.67
CLSTN3-216ENST00000545663 HOXC6P09630 235 aa19.23■□□□□ 0.67
CLSTN3-216ENST00000545663 PRAMEF19Q5SWL8 479 aa19.23■□□□□ 0.67
CLSTN3-216ENST00000545663 KHSRPQ92945 711 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLSTN3-216ENST00000545663 FAM163AQ96GL9 167 aaPredicted RBP19.23■□□□□ 0.67
CLSTN3-216ENST00000545663 EMILIN3Q9NT22 766 aa19.23■□□□□ 0.67
CLSTN3-216ENST00000545663 ABCF2Q9UG63 623 aa19.23■□□□□ 0.67
CLSTN3-216ENST00000545663 TRANK1O15050 2925 aa19.22■□□□□ 0.67
CLSTN3-216ENST00000545663 PQBP1O60828 265 aaKnown RBP19.22■□□□□ 0.67
CLSTN3-216ENST00000545663 GLRX3O76003 335 aaKnown RBP19.22■□□□□ 0.67
CLSTN3-216ENST00000545663 C16orf59Q7L2K0 433 aa19.22■□□□□ 0.67
CLSTN3-216ENST00000545663 ZNF384Q8TF68 577 aa19.22■□□□□ 0.67
CLSTN3-216ENST00000545663 GNL3LQ9NVN8 582 aaKnown RBP19.22■□□□□ 0.67
CLSTN3-216ENST00000545663 DENND2AQ9ULE3 1009 aa19.22■□□□□ 0.67
CLSTN3-216ENST00000545663 WDFY4Q6ZS81 3184 aa19.22■□□□□ 0.67
CLSTN3-216ENST00000545663 GPR75-ASB3A0A0A6YYF3 556 aa19.21■□□□□ 0.67
CLSTN3-216ENST00000545663 USP17L10C9JJH3 530 aa19.21■□□□□ 0.67
CLSTN3-216ENST00000545663 EYA2O00167 538 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms