RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	XRCC5	P13010	732 aa	Known RBP	6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	GART	P22102	1010 aa		6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	CANX	P27824	592 aa	Known RBP	6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	GBP2	P32456	591 aa	Predicted RBP	6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	EIF4A3	P38919	411 aa	Known RBP	6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	HNRNPU	Q00839	825 aa	Known RBP eCLIP	6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	DTHD1	Q6ZMT9	781 aa		6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	SV2B	Q7L1I2	683 aa		6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	ATG4D	Q86TL0	474 aa	Predicted RBP	6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	RELL1	Q8IUW5	271 aa		6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	PHC3	Q8NDX5	983 aa		6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	RHOV	Q96L33	236 aa		6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	MKNK2	Q9HBH9	465 aa		6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	NACAD	O15069	1562 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	CELA3A	P09093	270 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	PRKCQ	Q04759	706 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	PWP1	Q13610	501 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	TTLL4	Q14679	1199 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	TPTE2	Q6XPS3	522 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	ZNF296	Q8WUU4	475 aa	Predicted RBP	6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	SEC16B	Q96JE7	1060 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	HIRIP3	Q9BW71	556 aa	Predicted RBP	6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	KCNQ5	Q9NR82	932 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	PCOLCE2	Q9UKZ9	415 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	TLR6	Q9Y2C9	796 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308		U3KQE9	123 aa		6.12	□□□□□ -1.43
SNHG1-222	ENST00000545308	RNGTT	O60942	597 aa	Known RBP	6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	LEFTY1	O75610	366 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	RNASE1	P07998	156 aa	Known RBP	6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	NASP	P49321	788 aa	Predicted RBP	6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	LIG3	P49916	1009 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	FAM160A1	Q05DH4	1040 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	IFI16	Q16666	785 aa	Known RBP	6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	ZNF648	Q5T619	568 aa	Predicted RBP	6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	FBXL19	Q6PCT2	694 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	PDZD3	Q86UT5	571 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	DUSP23	Q9BVJ7	150 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	OSBPL2	Q9H1P3	480 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	ZSWIM4	Q9H7M6	989 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	RC3H2	Q9HBD1	1191 aa	Known RBP	6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	GINM1	Q9NU53	330 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	MBNL3	Q9NUK0	354 aa	Known RBP	6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	TMEM39A	Q9NV64	488 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	ADAMTS6	Q9UKP5	1117 aa		6.11	□□□□□ -1.43
SNHG1-222	ENST00000545308	TLDC2	A0PJX2	215 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	GREM1	O60565	184 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	PF4	P02776	101 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	HMGB1	P09429	215 aa	Known RBP	6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	HCLS1	P14317	486 aa	Predicted RBP	6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	CD96	P40200	585 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	OXCT1	P55809	520 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	PPP2R3A	Q06190	1150 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	SOGA3	Q5TF21	947 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	PI4K2B	Q8TCG2	481 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	NT5C1A	Q9BXI3	368 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	ZNF408	Q9H9D4	720 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	GPN3	Q9UHW5	284 aa	Predicted RBP	6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	EFR3B	Q9Y2G0	817 aa		6.1	□□□□□ -1.43
SNHG1-222	ENST00000545308	ENC1	O14682	589 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	PAGE1	O75459	146 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	CEACAM5	P06731	702 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	NEFM	P07197	916 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	RLBP1	P12271	317 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	SOX9	P48436	509 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	AOC3	Q16853	763 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	ZNF662	Q6ZS27	426 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	ARHGAP27	Q6ZUM4	889 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	FAM168A	Q92567	244 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	KCNB2	Q92953	911 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	HRASLS5	Q96KN8	279 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	NECAB3	Q96P71	396 aa	Predicted RBP	6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	UBP1	Q9NZI7	540 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	PLAGL2	Q9UPG8	496 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	TBX22	Q9Y458	520 aa		6.09	□□□□□ -1.43
SNHG1-222	ENST00000545308	TMEM265	A0A087WTH1	108 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	FARP2	O94887	1054 aa	Predicted RBP	6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	TFE3	P19532	575 aa	Predicted RBP	6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	ETFB	P38117	255 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	CRK	P46108	304 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	SERINC3	Q13530	473 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	CAMK2G	Q13555	558 aa	Predicted RBP	6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	BMS1	Q14692	1282 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	LRRN4CL	Q8ND94	238 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	STK35	Q8TDR2	534 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	TMEM40	Q8WWA1	233 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	ISL2	Q96A47	359 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	CEP44	Q9C0F1	390 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	TMA7	Q9Y2S6	64 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	SUPT16H	Q9Y5B9	1047 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	MRVI1	Q9Y6F6	885 aa		6.08	□□□□□ -1.44
SNHG1-222	ENST00000545308	DBX1	A6NMT0	343 aa		6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	SSB	P05455	408 aa	Known RBP eCLIP	6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	ARNT	P27540	789 aa		6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	ERVK-24	P63145	666 aa		6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	LMNB2	Q03252	620 aa		6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	ZNF124	Q15973	351 aa		6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	ZC3H12A	Q5D1E8	599 aa	Known RBP	6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	TTBK2	Q6IQ55	1244 aa		6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	ZNF746	Q6NUN9	644 aa	Predicted RBP	6.07	□□□□□ -1.44
SNHG1-222	ENST00000545308	AGMO	Q6ZNB7	445 aa		6.07	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms