RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 NBPF11Q86T75 865 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 TTC6Q86TZ1 520 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 CD99L2Q8TCZ2 262 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 TGFBRAP1Q8WUH2 860 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 SDR42E1Q8WUS8 393 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 SLC10A4Q96EP9 437 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 IDI2Q9BXS1 227 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 EPB41L4AQ9HCS5 686 aaPredicted RBP11.26□□□□□ -0.61
YBX3-215ENST00000544504 MCM9Q9NXL9 1143 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 ANAPC4Q9UJX5 808 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 UNC80Q8N2C7 3258 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 LAMA4Q16363 1823 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 IGF2BP3O00425 579 aaKnown RBP eCLIP11.25□□□□□ -0.61
YBX3-215ENST00000544504 ENTPD3O75355 529 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 SP3Q02447 781 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 PDE4BQ07343 736 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 PPARAQ07869 468 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 TNFAIP1Q13829 316 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 BLOC1S2Q6QNY1 142 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 CHRDL2Q6WN34 429 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 APOBEC3FQ8IUX4 373 aaKnown RBP11.25□□□□□ -0.61
YBX3-215ENST00000544504 NEK1Q96PY6 1258 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 KRT23Q9C075 422 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 DHX36Q9H2U1 1008 aaKnown RBP11.25□□□□□ -0.61
YBX3-215ENST00000544504 ANGEL1Q9UNK9 670 aaKnown RBP11.25□□□□□ -0.61
YBX3-215ENST00000544504 CYP46A1Q9Y6A2 500 aa11.25□□□□□ -0.61
YBX3-215ENST00000544504 UNCXA6NJT0 531 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 MINDY4BA8MYZ0 360 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 USP17L12C9JPN9 530 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 USP17L21D6R901 530 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 E7EWF7 191 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 POLR3DP05423 398 aaPredicted RBP11.24□□□□□ -0.61
YBX3-215ENST00000544504 HLA-DOAP06340 250 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 TNNI2P48788 182 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 CRHR2Q13324 411 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 ARHGEF6Q15052 776 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 SLC4A8Q2Y0W8 1093 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 SLC9C1Q4G0N8 1177 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 AKNAD1Q5T1N1 836 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 CTR9Q6PD62 1173 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 MFSD6Q6ZSS7 791 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 MAPKAPK5Q8IW41 473 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 RASEFQ8IZ41 740 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 NCOA7Q8NI08 942 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 STAG1Q8WVM7 1258 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 JAKMIP1Q96N16 626 aaKnown RBP11.24□□□□□ -0.61
YBX3-215ENST00000544504 KIF2CQ99661 725 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 ZSWIM6Q9HCJ5 1215 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 DAXXQ9UER7 740 aaPredicted RBP11.24□□□□□ -0.61
YBX3-215ENST00000544504 PALD1Q9ULE6 856 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 FLT1P17948 1338 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 WDR19Q8NEZ3 1342 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 COL2A1P02458 1487 aaPredicted RBP11.24□□□□□ -0.61
YBX3-215ENST00000544504 TRIOBPQ9H2D6 2365 aa11.24□□□□□ -0.61
YBX3-215ENST00000544504 NAV1Q8NEY1 1877 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 WDHD1O75717 1129 aaPredicted RBP11.23□□□□□ -0.61
YBX3-215ENST00000544504 CASTP20810 708 aaKnown RBP11.23□□□□□ -0.61
YBX3-215ENST00000544504 NEK4P51957 841 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 HAND2P61296 217 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 ANKRD1Q15327 319 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 MAP3K11Q16584 847 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 SPDYE2Q495Y8 402 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 C12orf60Q5U649 245 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 RUFY3Q7L099 469 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 FAM83AQ86UY5 434 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 SNX21Q969T3 373 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 ZBED3Q96IU2 234 aaPredicted RBP11.23□□□□□ -0.61
YBX3-215ENST00000544504 WNK4Q96J92 1243 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 PRMT6Q96LA8 375 aaPredicted RBP11.23□□□□□ -0.61
YBX3-215ENST00000544504 MTA3Q9BTC8 594 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 TDRD3Q9H7E2 651 aaKnown RBP11.23□□□□□ -0.61
YBX3-215ENST00000544504 RBM27Q9P2N5 1060 aaKnown RBP11.23□□□□□ -0.61
YBX3-215ENST00000544504 ROBO3Q96MS0 1386 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 FOCADQ5VW36 1801 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 ECM29Q5VYK3 1845 aa11.23□□□□□ -0.61
YBX3-215ENST00000544504 ORC4O43929 436 aa11.22□□□□□ -0.61
YBX3-215ENST00000544504 PPP1R12BO60237 982 aaPredicted RBP11.22□□□□□ -0.61
YBX3-215ENST00000544504 MCM5P33992 734 aa11.22□□□□□ -0.61
YBX3-215ENST00000544504 KIAA0100Q14667 2235 aaKnown RBP11.22□□□□□ -0.61
YBX3-215ENST00000544504 SART3Q15020 963 aaKnown RBP11.22□□□□□ -0.61
YBX3-215ENST00000544504 DHX32Q7L7V1 743 aaKnown RBP11.22□□□□□ -0.61
YBX3-215ENST00000544504 HSCBQ8IWL3 235 aa11.22□□□□□ -0.61
YBX3-215ENST00000544504 ESR2Q92731 530 aa11.22□□□□□ -0.61
YBX3-215ENST00000544504 OSBPL5Q9H0X9 879 aaPredicted RBP11.22□□□□□ -0.61
YBX3-215ENST00000544504 EHD4Q9H223 541 aa11.22□□□□□ -0.61
YBX3-215ENST00000544504 ALDH8A1Q9H2A2 487 aaPredicted RBP11.22□□□□□ -0.61
YBX3-215ENST00000544504 ZNF70Q9UC06 446 aaPredicted RBP11.22□□□□□ -0.61
YBX3-215ENST00000544504 SWAP70Q9UH65 585 aa11.22□□□□□ -0.61
YBX3-215ENST00000544504 CDK5RAP2Q96SN8 1893 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 LAMB1P07942 1786 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 ATRNL1Q5VV63 1379 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 FGRP09769 529 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 RPS6KB1P23443 525 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 PICALMQ13492 652 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 CCDC178Q5BJE1 867 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 TBC1D10CQ8IV04 446 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 FOXP4Q8IVH2 680 aaPredicted RBP11.21□□□□□ -0.61
YBX3-215ENST00000544504 ZSCAN29Q8IWY8 852 aaPredicted RBP11.21□□□□□ -0.61
YBX3-215ENST00000544504 FAM151AQ8WW52 585 aa11.21□□□□□ -0.61
YBX3-215ENST00000544504 CHMP4CQ96CF2 233 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms