RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-208	ENST00000540960	CHD7	Q9P2D1	2997 aa		10.13	□□□□□ -0.79
CHD4-208	ENST00000540960	NEURL1B	A8MQ27	555 aa		10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	REC8	O95072	547 aa		10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.12	□□□□□ -0.79	9e-7	■■■□□ 15.2
CHD4-208	ENST00000540960	TTC22	Q5TAA0	569 aa		10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	TICAM2	Q86XR7	235 aa		10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	PLEKHM2	Q8IWE5	1019 aa		10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	CLASRP	Q8N2M8	674 aa	Known RBP	10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	PBX4	Q9BYU1	374 aa		10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	CWC25	Q9NXE8	425 aa	Predicted RBP	10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	LEMD3	Q9Y2U8	911 aa		10.12	□□□□□ -0.79
CHD4-208	ENST00000540960	GBF1	Q92538	1859 aa		10.11	□□□□□ -0.79
CHD4-208	ENST00000540960	PDE8A	O60658	829 aa		10.11	□□□□□ -0.79
CHD4-208	ENST00000540960	TNNI2	P48788	182 aa		10.11	□□□□□ -0.79
CHD4-208	ENST00000540960	SMCR8	Q8TEV9	937 aa	Predicted RBP	10.11	□□□□□ -0.79
CHD4-208	ENST00000540960	PDLIM7	Q9NR12	457 aa		10.11	□□□□□ -0.79
CHD4-208	ENST00000540960	FBXO3	Q9UK99	471 aa		10.11	□□□□□ -0.79
CHD4-208	ENST00000540960	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.11	□□□□□ -0.79
CHD4-208	ENST00000540960	TTC41P	Q6P2S7	1318 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	KMT2B	Q9UMN6	2715 aa	Predicted RBP	10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	NBPF7	P0C2Y1	421 aa	Predicted RBP	10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	MX1	P20591	662 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	CCL14	Q16627	93 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	AAK1	Q2M2I8	961 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	TRIM60	Q495X7	471 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	GADL1	Q6ZQY3	521 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	TBC1D32	Q96NH3	1257 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	MYD88	Q99836	296 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	GREM2	Q9H772	168 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	TTF2	Q9UNY4	1162 aa	Known RBP	10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	C5orf42	Q9H799	3197 aa		10.1	□□□□□ -0.79
CHD4-208	ENST00000540960	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	10.09	□□□□□ -0.79
CHD4-208	ENST00000540960		A0A0G2JLL6	359 aa	Predicted RBP	10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	HIP1	O00291	1037 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	CXCL11	O14625	94 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	PEX10	O60683	326 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	PDE1A	P54750	535 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	SKIV2L	Q15477	1246 aa	Known RBP	10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	GRIK5	Q16478	980 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	SLC39A5	Q6ZMH5	540 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	PRRT2	Q7Z6L0	340 aa	Predicted RBP	10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	RHPN1	Q8TCX5	695 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	CDC5L	Q99459	802 aa	Known RBP	10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	ZNF341	Q9BYN7	854 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	C22orf23	Q9BZE7	217 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	ZNF112	Q9UJU3	913 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	DCHS1	Q96JQ0	3298 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	PKD1L2	Q7Z442	2459 aa		10.09	□□□□□ -0.79
CHD4-208	ENST00000540960	PNMA6E	A0A0J9YXQ4	647 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960		H7C1W4	665 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	GLRX3	O76003	335 aa	Known RBP	10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	IGKV5-2	P06315	115 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	IFIT2	P09913	472 aa	Known RBP	10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	IL1R1	P14778	569 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	MCC	P23508	829 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	CRK	P46108	304 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	FKBP1A	P62942	108 aa	Known RBP	10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	FAM110C	Q1W6H9	321 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	TTLL11	Q8NHH1	800 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	COPRS	Q9NQ92	184 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	RNF216	Q9NWF9	866 aa	Predicted RBP	10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	SERPINA10	Q9UK55	444 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	EXOC6B	Q9Y2D4	811 aa		10.08	□□□□□ -0.8
CHD4-208	ENST00000540960	PHIP	Q8WWQ0	1821 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	MYH3	P11055	1940 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	EPG5	Q9HCE0	2579 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	TAF5L	O75529	589 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	PCCA	P05165	728 aa	Predicted RBP	10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	RBM25	P49756	843 aa	Known RBP	10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	CWF19L2	Q2TBE0	894 aa	Known RBP	10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	RABL6	Q3YEC7	729 aa	Predicted RBP	10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	TREML2	Q5T2D2	321 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	GJC2	Q5T442	439 aa	Predicted RBP	10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	CCDC129	Q6ZRS4	1044 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	FASTKD5	Q7L8L6	764 aa	Known RBP	10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	RUFY2	Q8WXA3	655 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	KCNH6	Q9H252	994 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	ZHX2	Q9Y6X8	837 aa		10.07	□□□□□ -0.8
CHD4-208	ENST00000540960	CTSW	P56202	376 aa		10.06	□□□□□ -0.8
CHD4-208	ENST00000540960	DCAF15	Q66K64	600 aa		10.06	□□□□□ -0.8
CHD4-208	ENST00000540960	SKAP1	Q86WV1	359 aa		10.06	□□□□□ -0.8
CHD4-208	ENST00000540960	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.06	□□□□□ -0.8	1e-11	■■□□□ 12
CHD4-208	ENST00000540960	ECHDC1	Q9NTX5	307 aa		10.06	□□□□□ -0.8
CHD4-208	ENST00000540960	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	10.06	□□□□□ -0.8
CHD4-208	ENST00000540960	SLC45A1	Q9Y2W3	748 aa		10.06	□□□□□ -0.8
CHD4-208	ENST00000540960	AFG3L2	Q9Y4W6	797 aa		10.06	□□□□□ -0.8
CHD4-208	ENST00000540960	PTPRZ1	P23471	2315 aa	Predicted RBP	10.06	□□□□□ -0.8
CHD4-208	ENST00000540960	ZFHX4	Q86UP3	3567 aa		10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	RPAP1	Q9BWH6	1393 aa	Predicted RBP	10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	APBB1	O00213	710 aa		10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	CIAO1	O76071	339 aa		10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	SDS	P20132	328 aa		10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	KCNJ4	P48050	445 aa		10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	MFAP1	P55081	439 aa	Known RBP	10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	CHRND	Q07001	517 aa		10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	MFSD14B	Q5SR56	506 aa		10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	NOL9	Q5SY16	702 aa	Known RBP	10.05	□□□□□ -0.8
CHD4-208	ENST00000540960	KRT40	Q6A162	431 aa		10.05	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms