RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 CCAR1Q8IX12 1150 aaKnown RBP14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 TEX11Q8IYF3 940 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 SPATA5Q8NB90 893 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 GUCD1Q96NT3 240 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 RAI14Q9P0K7 980 aa14.36□□□□□ -0.11
CLSTN3-209ENST00000539982 ERVK-9P63128 1117 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 ERVK-24P63145 666 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 JAG1P78504 1218 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 CCL14Q16627 93 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 GPR142Q7Z601 462 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 PLEKHH3Q7Z736 793 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 FOXP4Q8IVH2 680 aaPredicted RBP14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 GTF3C2Q8WUA4 911 aaPredicted RBP14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 NEUROD6Q96NK8 337 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 LBHD1Q9BQE6 289 aaPredicted RBP14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 PORCNQ9H237 461 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 SMC4Q9NTJ3 1288 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 GINM1Q9NU53 330 aa14.35□□□□□ -0.11
CLSTN3-209ENST00000539982 GORABQ5T7V8 394 aa14.34□□□□□ -0.11
CLSTN3-209ENST00000539982 PI16Q6UXB8 463 aa14.34□□□□□ -0.11
CLSTN3-209ENST00000539982 SH3RF3Q8TEJ3 882 aaPredicted RBP14.34□□□□□ -0.11
CLSTN3-209ENST00000539982 APBA2Q99767 749 aa14.34□□□□□ -0.11
CLSTN3-209ENST00000539982 NOL10Q9BSC4 688 aaKnown RBP14.34□□□□□ -0.11
CLSTN3-209ENST00000539982 SENP6Q9GZR1 1112 aaPredicted RBP14.34□□□□□ -0.11
CLSTN3-209ENST00000539982 BAG3O95817 575 aa14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 SLFN5Q08AF3 891 aa14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 MAP2K5Q13163 448 aa14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 POTEEQ6S8J3 1075 aa14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 METTL16Q86W50 562 aaKnown RBP14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 EDC3Q96F86 508 aaKnown RBP14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 FAM161BQ96MY7 647 aa14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 LRP2BPQ9P2M1 347 aa14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 NOB1Q9ULX3 412 aaKnown RBP14.33□□□□□ -0.12
CLSTN3-209ENST00000539982 SRGAP3O43295 1099 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 GLRX3O76003 335 aaKnown RBP14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 PLCG2P16885 1265 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 ARID4AP29374 1257 aaPredicted RBP14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 ZNF697Q5TEC3 545 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 MFSD14CQ5VZR4 134 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L2Q6R6M4 530 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 PAGR1Q9BTK6 254 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 TRIM34Q9BYJ4 488 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 API5Q9BZZ5 524 aaKnown RBP14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 DNAJC18Q9H819 358 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 CWC22Q9HCG8 908 aaKnown RBP14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 EMILIN3Q9NT22 766 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 DNAH12Q6ZR08 3092 aa14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 LAMA2P24043 3122 aaKnown RBP14.32□□□□□ -0.12
CLSTN3-209ENST00000539982 MSCO60682 206 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 UQCRFS1P1P0C7P4 283 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 PPP4CP60510 307 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 CCNA1P78396 465 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 MAPKAPK5Q8IW41 473 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 CRACR2BQ8N4Y2 399 aaPredicted RBP14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 TGFBRAP1Q8WUH2 860 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 LPAR1Q92633 364 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 MEIS3Q99687 375 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 AATFQ9NY61 560 aaKnown RBP eCLIP14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 PRKAG2Q9UGJ0 569 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 ZBTB21Q9ULJ3 1066 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 RABGAP1Q9Y3P9 1069 aa14.31□□□□□ -0.12
CLSTN3-209ENST00000539982 SLC15A5A6NIM6 579 aa14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 GDF11O95390 407 aa14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 MCAMP43121 646 aa14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 MTX1Q13505 466 aa14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 SHROOM1Q2M3G4 852 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 NAA16Q6N069 864 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 CDX2Q99626 313 aaPredicted RBP14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 FLRT1Q9NZU1 646 aa14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 DDX20Q9UHI6 824 aaKnown RBP14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 PALD1Q9ULE6 856 aa14.3□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L15C9J2P7 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L13C9JLJ4 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L11C9JVI0 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L18D6R9N7 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L22D6RA61 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L17D6RBQ6 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L19D6RCP7 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L20D6RJB6 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 DNM1LO00429 736 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 CNMDO75829 334 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 GNAI3P08754 354 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 PTPREP23469 700 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 CNGA1P29973 690 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 ATN1P54259 1190 aaPredicted RBP14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 ATP2B2Q01814 1243 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 USP17L24Q0WX57 530 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 C12orf42Q96LP6 360 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 SEMA6BQ9H3T3 888 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 FLT1P17948 1338 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 SIPA1L1O43166 1804 aa14.29□□□□□ -0.12
CLSTN3-209ENST00000539982 HOXC6P09630 235 aa14.28□□□□□ -0.12
CLSTN3-209ENST00000539982 RTP1P59025 263 aa14.28□□□□□ -0.12
CLSTN3-209ENST00000539982 SHHQ15465 462 aa14.28□□□□□ -0.12
CLSTN3-209ENST00000539982 ATF7IPQ6VMQ6 1270 aa14.28□□□□□ -0.12
CLSTN3-209ENST00000539982 CATSPERGQ6ZRH7 1159 aa14.28□□□□□ -0.12
CLSTN3-209ENST00000539982 NDUFB9Q9Y6M9 179 aa14.28□□□□□ -0.12
CLSTN3-209ENST00000539982 IGSF3O75054 1194 aa14.27□□□□□ -0.13
CLSTN3-209ENST00000539982 HLA-DOAP06340 250 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms