RNA–Protein interactions for RNA: ENST00000539827.5

HOMER3-204, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-204ENST00000539827 USP28Q96RU2 1077 aa26.09■■□□□ 1.77
HOMER3-204ENST00000539827 MRE11P49959 708 aa26.09■■□□□ 1.77
HOMER3-204ENST00000539827 KIF23Q02241 960 aaPredicted RBP26.09■■□□□ 1.77
HOMER3-204ENST00000539827 PICALMQ13492 652 aa26.09■■□□□ 1.77
HOMER3-204ENST00000539827 ADAMTSL1Q8N6G6 1762 aa26.08■■□□□ 1.77
HOMER3-204ENST00000539827 MYH1P12882 1939 aa26.08■■□□□ 1.77
HOMER3-204ENST00000539827 DPEP1P16444 411 aa26.08■■□□□ 1.77
HOMER3-204ENST00000539827 CC2D2BQ6DHV5 1058 aa26.08■■□□□ 1.77
HOMER3-204ENST00000539827 TRIM22Q8IYM9 498 aa26.08■■□□□ 1.77
HOMER3-204ENST00000539827 ZNF444Q8N0Y2 327 aaPredicted RBP26.08■■□□□ 1.77
HOMER3-204ENST00000539827 USP40Q9NVE5 1235 aa26.08■■□□□ 1.77
HOMER3-204ENST00000539827 SNED1Q8TER0 1413 aa26.08■■□□□ 1.77
HOMER3-204ENST00000539827 DDX60LQ5H9U9 1706 aaKnown RBP26.08■■□□□ 1.77
HOMER3-204ENST00000539827 TROAPQ12815 778 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 TTLL6Q8N841 843 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 PGBD1Q96JS3 809 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 IL17RBQ9NRM6 502 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 SCN9AQ15858 1988 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 GOLGA6L4A6NEF3 574 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 DDAH1O94760 285 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 CDK8P49336 464 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 CCDC183Q5T5S1 534 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 STRIP1Q5VSL9 837 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 RCSD1Q6JBY9 416 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 WASF1Q92558 559 aa26.07■■□□□ 1.76
HOMER3-204ENST00000539827 USP17L3A6NCW0 530 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 USP17L4A6NCW7 530 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 CALM1P0DP23 149 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 CALM2P0DP24 149 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 CALM3P0DP25 149 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 RASA1P20936 1047 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 KIAA2012Q0VF49 1180 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 TRIM29Q14134 588 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 DACT2Q5SW24 774 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 LRSAM1Q6UWE0 723 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 HHIPL2Q6UWX4 724 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 USP17L1Q7RTZ2 530 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 KIAA0825Q8IV33 1275 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 RGS22Q8NE09 1264 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 SUPT20HQ8NEM7 779 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 TEKT1Q969V4 418 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 RCOR1Q9UKL0 485 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 PLEKHA8P1O95397 391 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 TSPY3P0CV98 308 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 TSPY8P0CW00 308 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 PPP2R5BQ15173 497 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 ATL3Q6DD88 541 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 C16orf86Q6ZW13 317 aa26.06■■□□□ 1.76
HOMER3-204ENST00000539827 DDX4Q9NQI0 724 aaKnown RBP26.06■■□□□ 1.76
HOMER3-204ENST00000539827 FOCADQ5VW36 1801 aa26.05■■□□□ 1.76
HOMER3-204ENST00000539827 PPIP5K2O43314 1243 aa26.05■■□□□ 1.76
HOMER3-204ENST00000539827 ZBTB7AO95365 584 aa26.05■■□□□ 1.76
HOMER3-204ENST00000539827 LIG1P18858 919 aa26.05■■□□□ 1.76
HOMER3-204ENST00000539827 CRKP46108 304 aa26.05■■□□□ 1.76
HOMER3-204ENST00000539827 BRAPQ7Z569 592 aa26.05■■□□□ 1.76
HOMER3-204ENST00000539827 RBM28Q9NW13 759 aaKnown RBP26.05■■□□□ 1.76
HOMER3-204ENST00000539827 DEXIO95424 95 aa26.04■■□□□ 1.76
HOMER3-204ENST00000539827 KCNA3P22001 575 aa26.04■■□□□ 1.76
HOMER3-204ENST00000539827 CDC42EP5Q6NZY7 148 aa26.04■■□□□ 1.76
HOMER3-204ENST00000539827 WDHD1O75717 1129 aaPredicted RBP26.04■■□□□ 1.76
HOMER3-204ENST00000539827 MYSM1Q5VVJ2 828 aa26.04■■□□□ 1.76
HOMER3-204ENST00000539827 APOBEC3HQ6NTF7 200 aaKnown RBP26.04■■□□□ 1.76
HOMER3-204ENST00000539827 KAT14Q9H8E8 782 aa26.04■■□□□ 1.76
HOMER3-204ENST00000539827 PCDHAC2Q9Y5I4 1007 aa26.04■■□□□ 1.76
HOMER3-204ENST00000539827 NT5C2P49902 561 aa26.03■■□□□ 1.76
HOMER3-204ENST00000539827 FKBP1AP62942 108 aaKnown RBP26.03■■□□□ 1.76
HOMER3-204ENST00000539827 PANK2Q9BZ23 570 aa26.03■■□□□ 1.76
HOMER3-204ENST00000539827 ZNF287Q9HBT7 754 aa26.03■■□□□ 1.76
HOMER3-204ENST00000539827 FUT2Q10981 343 aa26.02■■□□□ 1.76
HOMER3-204ENST00000539827 GNL2Q13823 731 aaKnown RBP26.02■■□□□ 1.76
HOMER3-204ENST00000539827 CCDC93Q567U6 631 aa26.02■■□□□ 1.76
HOMER3-204ENST00000539827 DGKHQ86XP1 1220 aa26.02■■□□□ 1.76
HOMER3-204ENST00000539827 CTCFLQ8NI51 663 aaPredicted RBP26.02■■□□□ 1.76
HOMER3-204ENST00000539827 KCNJ14Q9UNX9 436 aa26.02■■□□□ 1.76
HOMER3-204ENST00000539827 ATF5Q9Y2D1 282 aaPredicted RBP26.02■■□□□ 1.76
HOMER3-204ENST00000539827 CLIC4Q9Y696 253 aa26.02■■□□□ 1.76
HOMER3-204ENST00000539827 AKAP17AQ02040 695 aaKnown RBP26.02■■□□□ 1.76
HOMER3-204ENST00000539827 BICD2Q8TD16 824 aa26.02■■□□□ 1.76
HOMER3-204ENST00000539827 RNF26Q9BY78 433 aaPredicted RBP26.02■■□□□ 1.76
HOMER3-204ENST00000539827 TCP11L1Q9NUJ3 509 aa26.02■■□□□ 1.76
HOMER3-204ENST00000539827 hCG_1642624A0A1W2PR95 340 aa26.01■■□□□ 1.75
HOMER3-204ENST00000539827 ZNF646O15015 1829 aaPredicted RBP26.01■■□□□ 1.75
HOMER3-204ENST00000539827 CCDC178Q5BJE1 867 aa26.01■■□□□ 1.75
HOMER3-204ENST00000539827 TMTC3Q6ZXV5 915 aa26.01■■□□□ 1.75
HOMER3-204ENST00000539827 ANKS1AQ92625 1134 aa26.01■■□□□ 1.75
HOMER3-204ENST00000539827 RTEL1Q9NZ71 1219 aa26.01■■□□□ 1.75
HOMER3-204ENST00000539827 YDJCA8MPS7 323 aa26■■□□□ 1.75
HOMER3-204ENST00000539827 RBM5P52756 815 aaKnown RBP eCLIP26■■□□□ 1.75
HOMER3-204ENST00000539827 CCDC125Q86Z20 511 aa26■■□□□ 1.75
HOMER3-204ENST00000539827 RBSNQ9H1K0 784 aa26■■□□□ 1.75
HOMER3-204ENST00000539827 MYH6P13533 1939 aa26■■□□□ 1.75
HOMER3-204ENST00000539827 GNL3Q9BVP2 549 aaKnown RBP eCLIP26■■□□□ 1.75
HOMER3-204ENST00000539827 V9GY48 417 aaPredicted RBP26■■□□□ 1.75
HOMER3-204ENST00000539827 PRPF3O43395 683 aaKnown RBP25.99■■□□□ 1.75
HOMER3-204ENST00000539827 RTKN2Q8IZC4 609 aa25.99■■□□□ 1.75
HOMER3-204ENST00000539827 SRBD1Q8N5C6 995 aaKnown RBP25.99■■□□□ 1.75
HOMER3-204ENST00000539827 PNMA1Q8ND90 353 aa25.99■■□□□ 1.75
HOMER3-204ENST00000539827 ZDHHC15Q96MV8 337 aa25.99■■□□□ 1.75
HOMER3-204ENST00000539827 PKN1Q16512 942 aa25.98■■□□□ 1.75
HOMER3-204ENST00000539827 MMP1P03956 469 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms