RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SLF2Q8IX21 1173 aa11.53□□□□□ -0.56
USP28-205ENST00000537706 C8orf58Q8NAV2 365 aa11.53□□□□□ -0.56
USP28-205ENST00000537706 DCDC2CA8MYV0 355 aa11.52□□□□□ -0.56
USP28-205ENST00000537706 FKBP5Q13451 457 aaPredicted RBP11.52□□□□□ -0.56
USP28-205ENST00000537706 DIXDC1Q155Q3 683 aa11.52□□□□□ -0.56
USP28-205ENST00000537706 SLC44A5Q8NCS7 719 aa11.52□□□□□ -0.56
USP28-205ENST00000537706 FERMT2Q96AC1 680 aa11.52□□□□□ -0.56
USP28-205ENST00000537706 A0A1B0GUL6 1792 aa11.52□□□□□ -0.57
USP28-205ENST00000537706 C19orf81C9J6K1 198 aa11.52□□□□□ -0.57
USP28-205ENST00000537706 PBX2P40425 430 aa11.52□□□□□ -0.57
USP28-205ENST00000537706 WDR43Q15061 677 aaKnown RBP eCLIP11.52□□□□□ -0.57
USP28-205ENST00000537706 NCBP3Q53F19 620 aaKnown RBP11.52□□□□□ -0.57
USP28-205ENST00000537706 PSRC1Q6PGN9 363 aaPredicted RBP11.52□□□□□ -0.57
USP28-205ENST00000537706 PORCNQ9H237 461 aa11.52□□□□□ -0.57
USP28-205ENST00000537706 TXNRD2Q9NNW7 524 aa11.52□□□□□ -0.57
USP28-205ENST00000537706 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.52□□□□□ -0.57
USP28-205ENST00000537706 KIF16BQ96L93 1317 aa11.52□□□□□ -0.57
USP28-205ENST00000537706 DOCK1Q14185 1865 aa11.51□□□□□ -0.57
USP28-205ENST00000537706 PQBP1O60828 265 aaKnown RBP11.51□□□□□ -0.57
USP28-205ENST00000537706 SLC4A2P04920 1241 aa11.51□□□□□ -0.57
USP28-205ENST00000537706 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.51□□□□□ -0.57
USP28-205ENST00000537706 NKX2-4Q9H2Z4 354 aa11.51□□□□□ -0.57
USP28-205ENST00000537706 C11orf16Q9NQ32 467 aa11.51□□□□□ -0.57
USP28-205ENST00000537706 DDTLA6NHG4 134 aaPredicted RBP11.5□□□□□ -0.57
USP28-205ENST00000537706 SEPT4O43236 478 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 CYBAP13498 195 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 ITGB8P26012 769 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 CYP2C19P33261 490 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 PICALMQ13492 652 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 GNL3LQ9NVN8 582 aaKnown RBP11.5□□□□□ -0.57
USP28-205ENST00000537706 SLC5A4Q9NY91 659 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 RBPJLQ9UBG7 517 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 PLXNB2O15031 1838 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 VCANP13611 3396 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 APBB1O00213 710 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 ST18O60284 1047 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 HOXC6P09630 235 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 ALADP13716 330 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 PTPREP23469 700 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 FLIIQ13045 1269 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 MTMR2Q13614 643 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 LRRC41Q15345 812 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 Q3C1V9 767 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 TMEM199Q8N511 208 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 ZGPATQ8N5A5 531 aaKnown RBP11.5□□□□□ -0.57
USP28-205ENST00000537706 PUS3Q9BZE2 481 aaKnown RBP11.5□□□□□ -0.57
USP28-205ENST00000537706 FLRT1Q9NZU1 646 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 PHF24Q9UPV7 400 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 RABGAP1Q9Y3P9 1069 aa11.5□□□□□ -0.57
USP28-205ENST00000537706 GRXCR1A8MXD5 290 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 PDE8BO95263 885 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 TIMP1P01033 207 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 SLC5A1P13866 664 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 CAP2P40123 477 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 BACE1P56817 501 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 SH3BP5LQ7L8J4 393 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 RNF180Q86T96 592 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 DPP9Q86TI2 863 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 WDR18Q9BV38 432 aa11.49□□□□□ -0.57
USP28-205ENST00000537706 C9orf78Q9NZ63 289 aaPredicted RBP11.49□□□□□ -0.57
USP28-205ENST00000537706 LOC285556D6RIA3 1793 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 TLL1O43897 1013 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 PUM3Q15397 648 aaKnown RBP11.48□□□□□ -0.57
USP28-205ENST00000537706 TMEM240Q5SV17 173 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 OLFML2BQ68BL8 750 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 MFSD5Q6N075 450 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 DOCK2Q92608 1830 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 HLA-CQ95604 372 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 TOX2Q96NM4 488 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 PIEZO1Q92508 2521 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 PTPRFP10586 1907 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 PRDX5P30044 214 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 ANO1Q5XXA6 986 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 PPP2R2DQ66LE6 453 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 G2E3Q7L622 706 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 TRPV1Q8NER1 839 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 FBXL18Q96ME1 805 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 FRMPD3Q5JV73 1810 aa11.48□□□□□ -0.57
USP28-205ENST00000537706 MROH7Q68CQ1 1323 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 ZNF521Q96K83 1311 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 USP17L10C9JJH3 530 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 GRM8O00222 908 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 PEX10O60683 326 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 RARBP10826 455 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 GRB14Q14449 540 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 EPHA10Q5JZY3 1008 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 DZIP1Q86YF9 867 aaKnown RBP11.47□□□□□ -0.57
USP28-205ENST00000537706 NDUFB9Q9Y6M9 179 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 ASNSP08243 561 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 RASIP1Q5U651 963 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 NPLOC4Q8TAT6 608 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 GINM1Q9NU53 330 aa11.47□□□□□ -0.57
USP28-205ENST00000537706 TCF20Q9UGU0 1960 aaKnown RBP11.46□□□□□ -0.57
USP28-205ENST00000537706 RLFQ13129 1914 aa11.46□□□□□ -0.58
USP28-205ENST00000537706 USP17L2Q6R6M4 530 aa11.46□□□□□ -0.58
USP28-205ENST00000537706 ANKRD33Q7Z3H0 272 aa11.46□□□□□ -0.58
USP28-205ENST00000537706 TSPYL6Q8N831 410 aa11.46□□□□□ -0.58
USP28-205ENST00000537706 NUP133Q8WUM0 1156 aa11.46□□□□□ -0.58
USP28-205ENST00000537706 TRIM34Q9BYJ4 488 aa11.46□□□□□ -0.58
USP28-205ENST00000537706 XPNPEP3Q9NQH7 507 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms