RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ZNF165	P49910	485 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	MLEC	Q14165	292 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	SLFN12	Q8IYM2	578 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	FBXO27	Q8NI29	283 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	NKD1	Q969G9	470 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	TMEM87B	Q96K49	555 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	DUSP23	Q9BVJ7	150 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	OSBPL1A	Q9BXW6	950 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	MKNK2	Q9HBH9	465 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	PRDM10	Q9NQV6	1147 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	UBP1	Q9NZI7	540 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	PIM2	Q9P1W9	311 aa		7.81	□□□□□ -1.16
CD44-231	ENST00000531110	HTR3B	O95264	441 aa		7.8	□□□□□ -1.16
CD44-231	ENST00000531110	PLCG1	P19174	1290 aa		7.8	□□□□□ -1.16
CD44-231	ENST00000531110	GRIK1	P39086	918 aa		7.8	□□□□□ -1.16
CD44-231	ENST00000531110	YARS	P54577	528 aa	Known RBP	7.8	□□□□□ -1.16
CD44-231	ENST00000531110	CDK5R2	Q13319	367 aa		7.8	□□□□□ -1.16
CD44-231	ENST00000531110	NKG7	Q16617	165 aa		7.8	□□□□□ -1.16
CD44-231	ENST00000531110	ZNF746	Q6NUN9	644 aa	Predicted RBP	7.8	□□□□□ -1.16
CD44-231	ENST00000531110	UBE3D	Q7Z6J8	389 aa		7.8	□□□□□ -1.16
CD44-231	ENST00000531110	ACSF2	Q96CM8	615 aa	Predicted RBP	7.8	□□□□□ -1.16
CD44-231	ENST00000531110	COX4I2	Q96KJ9	171 aa		7.8	□□□□□ -1.16
CD44-231	ENST00000531110	TJP2	Q9UDY2	1190 aa		7.8	□□□□□ -1.16
CD44-231	ENST00000531110	IGF2BP3	O00425	579 aa	Known RBP eCLIP	7.79	□□□□□ -1.16
CD44-231	ENST00000531110	FAM87A	P0C7U9	286 aa		7.79	□□□□□ -1.16
CD44-231	ENST00000531110	IMPDH2	P12268	514 aa		7.79	□□□□□ -1.16
CD44-231	ENST00000531110	FOSL1	P15407	271 aa		7.79	□□□□□ -1.16
CD44-231	ENST00000531110	FBXL6	Q8N531	539 aa		7.79	□□□□□ -1.16
CD44-231	ENST00000531110	CCSER2	Q9H7U1	834 aa		7.79	□□□□□ -1.16
CD44-231	ENST00000531110	BRMS1	Q9HCU9	246 aa		7.79	□□□□□ -1.16
CD44-231	ENST00000531110	REV1	Q9UBZ9	1251 aa		7.79	□□□□□ -1.16
CD44-231	ENST00000531110	LEMD3	Q9Y2U8	911 aa		7.79	□□□□□ -1.16
CD44-231	ENST00000531110	FAM170B	A6NMN3	283 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	TLR3	O15455	904 aa	Known RBP	7.78	□□□□□ -1.16
CD44-231	ENST00000531110	ERCC5	P28715	1186 aa	Predicted RBP	7.78	□□□□□ -1.16
CD44-231	ENST00000531110	PAK2	Q13177	524 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	LRRFIP1	Q32MZ4	808 aa	Known RBP	7.78	□□□□□ -1.16
CD44-231	ENST00000531110	SEZ6	Q53EL9	994 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	C22orf34	Q6ZV56	151 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	ZNF765	Q7L2R6	523 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	GPRASP2	Q96D09	838 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	GMIP	Q9P107	970 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	MAPK8IP1	Q9UQF2	711 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	CORIN	Q9Y5Q5	1042 aa		7.78	□□□□□ -1.16
CD44-231	ENST00000531110	MEIS3P2	A8K0S8	358 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	7.77	□□□□□ -1.17
CD44-231	ENST00000531110	COBL	O75128	1261 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	SOX9	P48436	509 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	CD97	P48960	835 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	PRAMEF13	Q5VWM6	474 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	C9orf131	Q5VYM1	1079 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	TOP6BL	Q8N6T0	577 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	CYB5D2	Q8WUJ1	264 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	LGR6	Q9HBX8	967 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	GTF2IRD1	Q9UHL9	959 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	PCDHB14	Q9Y5E9	798 aa		7.77	□□□□□ -1.17
CD44-231	ENST00000531110	GRIN3B	O60391	1043 aa		7.76	□□□□□ -1.17
CD44-231	ENST00000531110	TGFB1	P01137	390 aa		7.76	□□□□□ -1.17
CD44-231	ENST00000531110	FAM214B	Q7L5A3	538 aa		7.76	□□□□□ -1.17
CD44-231	ENST00000531110	SEC16B	Q96JE7	1060 aa		7.76	□□□□□ -1.17
CD44-231	ENST00000531110	ZNRF3	Q9ULT6	936 aa		7.76	□□□□□ -1.17
CD44-231	ENST00000531110	SLITRK5	O94991	958 aa		7.75	□□□□□ -1.17
CD44-231	ENST00000531110	EOMES	O95936	686 aa		7.75	□□□□□ -1.17
CD44-231	ENST00000531110	ZMYM1	Q5SVZ6	1142 aa		7.75	□□□□□ -1.17
CD44-231	ENST00000531110	CDCP2	Q5VXM1	449 aa		7.75	□□□□□ -1.17
CD44-231	ENST00000531110	LETMD1	Q6P1Q0	360 aa		7.75	□□□□□ -1.17
CD44-231	ENST00000531110	NPM2	Q86SE8	214 aa	Known RBP	7.75	□□□□□ -1.17
CD44-231	ENST00000531110	SHISA5	Q8N114	240 aa		7.75	□□□□□ -1.17
CD44-231	ENST00000531110	RBBP8NL	Q8NC74	664 aa	Predicted RBP	7.75	□□□□□ -1.17
CD44-231	ENST00000531110	FAM13C	Q8NE31	585 aa		7.75	□□□□□ -1.17
CD44-231	ENST00000531110	CYP26A1	O43174	497 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	LEFTY1	O75610	366 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	CYP7A1	P22680	504 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	CCNF	P41002	786 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	ETV3	P41162	512 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	LRP8	Q14114	963 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	MSMP	Q1L6U9	139 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	MIPEP	Q99797	713 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	PRDM5	Q9NQX1	630 aa	Predicted RBP	7.74	□□□□□ -1.17
CD44-231	ENST00000531110	STRIP2	Q9ULQ0	834 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	INPP5F	Q9Y2H2	1132 aa		7.74	□□□□□ -1.17
CD44-231	ENST00000531110	SLC22A31	A6NKX4	558 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	MCM4	P33991	863 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	CLC	Q05315	142 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	GNL2	Q13823	731 aa	Known RBP	7.73	□□□□□ -1.17
CD44-231	ENST00000531110	DTX1	Q86Y01	620 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	TAB3	Q8N5C8	712 aa	Predicted RBP	7.73	□□□□□ -1.17
CD44-231	ENST00000531110	DNAJB8	Q8NHS0	232 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	TMEM40	Q8WWA1	233 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	ACBD3	Q9H3P7	528 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	CNNM2	Q9H8M5	875 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	CEP131	Q9UPN4	1083 aa		7.73	□□□□□ -1.17
CD44-231	ENST00000531110	PRNP	P04156	253 aa		7.72	□□□□□ -1.17
CD44-231	ENST00000531110	ZNF865	P0CJ78	1059 aa	Predicted RBP	7.72	□□□□□ -1.17
CD44-231	ENST00000531110	SPINK2	P20155	84 aa		7.72	□□□□□ -1.17
CD44-231	ENST00000531110	KIR3DL1	P43629	444 aa		7.72	□□□□□ -1.17
CD44-231	ENST00000531110	INTS3	Q68E01	1043 aa	Known RBP	7.72	□□□□□ -1.17
CD44-231	ENST00000531110	GK5	Q6ZS86	529 aa		7.72	□□□□□ -1.17
CD44-231	ENST00000531110	CCDC74B	Q96LY2	380 aa		7.72	□□□□□ -1.17
CD44-231	ENST00000531110	HEXIM2	Q96MH2	286 aa	Known RBP	7.72	□□□□□ -1.17

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