RNA–Protein interactions for RNA: ENST00000529994.1

SF3B2-208, Transcript of splicing factor 3b subunit 2, human

TSL 2

Gene SF3B2, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B2-208	ENST00000529994	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.97	□□□□□ -0.17
SF3B2-208	ENST00000529994	SOCS4	Q8WXH5	440 aa		13.97	□□□□□ -0.17
SF3B2-208	ENST00000529994	MEIS3	Q99687	375 aa		13.97	□□□□□ -0.17
SF3B2-208	ENST00000529994	PAGR1	Q9BTK6	254 aa		13.97	□□□□□ -0.17
SF3B2-208	ENST00000529994	PORCN	Q9H237	461 aa		13.97	□□□□□ -0.17
SF3B2-208	ENST00000529994	RBPJL	Q9UBG7	517 aa		13.97	□□□□□ -0.17
SF3B2-208	ENST00000529994	COL2A1	P02458	1487 aa	Predicted RBP	13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	GDF11	O95390	407 aa		13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	XRCC5	P13010	732 aa	Known RBP	13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	BACE1	P56817	501 aa		13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	GORAB	Q5T7V8	394 aa		13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	LHX8	Q68G74	356 aa		13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	GUCD1	Q96NT3	240 aa		13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	WDR18	Q9BV38	432 aa		13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	HERC5	Q9UII4	1024 aa	Known RBP	13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	NOB1	Q9ULX3	412 aa	Known RBP	13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	AKAP2	Q9Y2D5	859 aa		13.96	□□□□□ -0.17
SF3B2-208	ENST00000529994	CDK5RAP2	Q96SN8	1893 aa		13.95	□□□□□ -0.18
SF3B2-208	ENST00000529994	MAPK4	P31152	587 aa		13.95	□□□□□ -0.18
SF3B2-208	ENST00000529994	HOXA7	P31268	230 aa	Predicted RBP	13.95	□□□□□ -0.18
SF3B2-208	ENST00000529994	GPR142	Q7Z601	462 aa		13.95	□□□□□ -0.18
SF3B2-208	ENST00000529994	USP6NL	Q92738	828 aa		13.95	□□□□□ -0.18
SF3B2-208	ENST00000529994	PI4KB	Q9UBF8	816 aa		13.95	□□□□□ -0.18
SF3B2-208	ENST00000529994	NDUFB9	Q9Y6M9	179 aa		13.95	□□□□□ -0.18
SF3B2-208	ENST00000529994	EYS	Q5T1H1	3165 aa		13.95	□□□□□ -0.18
SF3B2-208	ENST00000529994	USP17L10	C9JJH3	530 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	SRGAP3	O43295	1099 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	ASNS	P08243	561 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	CT47B1	P0C2W7	299 aa	Predicted RBP	13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	VCAN	P13611	3396 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	RGS2	P41220	211 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	ERVK-9	P63128	1117 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	ERVK-24	P63145	666 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	MORN1	Q5T089	497 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	MAPKAPK5	Q8IW41	473 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	TRMT44	Q8IYL2	757 aa	Known RBP	13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	NOL10	Q9BSC4	688 aa	Known RBP	13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	DNAJC18	Q9H819	358 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	CWC22	Q9HCG8	908 aa	Known RBP	13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	LRP2BP	Q9P2M1	347 aa		13.94	□□□□□ -0.18
SF3B2-208	ENST00000529994	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	C19orf81	C9J6K1	198 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	POTEB2	H3BUK9	544 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	MAP4K4	O95819	1239 aa	Predicted RBP	13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	MCAM	P43121	646 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	RARS	P54136	660 aa	Known RBP	13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	ATN1	P54259	1190 aa	Predicted RBP	13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	ZYX	Q15942	572 aa	Known RBP	13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	WDR78	Q5VTH9	848 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	POTEE	Q6S8J3	1075 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	PLEKHH3	Q7Z736	793 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	TGFBRAP1	Q8WUH2	860 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	APBA2	Q99767	749 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	TRIM34	Q9BYJ4	488 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	SNRK	Q9NRH2	765 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	EMILIN3	Q9NT22	766 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	SAP30BP	Q9UHR5	308 aa	Known RBP	13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	PALD1	Q9ULE6	856 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	HDAC5	Q9UQL6	1122 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	MAST2	Q6P0Q8	1798 aa		13.93	□□□□□ -0.18
SF3B2-208	ENST00000529994	FOCAD	Q5VW36	1801 aa		13.92	□□□□□ -0.18
SF3B2-208	ENST00000529994	ARID4A	P29374	1257 aa	Predicted RBP	13.92	□□□□□ -0.18
SF3B2-208	ENST00000529994	CNGA1	P29973	690 aa		13.92	□□□□□ -0.18
SF3B2-208	ENST00000529994	FRAT1	Q92837	279 aa	Predicted RBP	13.92	□□□□□ -0.18
SF3B2-208	ENST00000529994	API5	Q9BZZ5	524 aa	Known RBP	13.92	□□□□□ -0.18
SF3B2-208	ENST00000529994	DHX36	Q9H2U1	1008 aa	Known RBP	13.92	□□□□□ -0.18
SF3B2-208	ENST00000529994	FLRT1	Q9NZU1	646 aa		13.92	□□□□□ -0.18
SF3B2-208	ENST00000529994	ZBTB21	Q9ULJ3	1066 aa		13.92	□□□□□ -0.18
SF3B2-208	ENST00000529994	MAP2K5	Q13163	448 aa		13.91	□□□□□ -0.18
SF3B2-208	ENST00000529994	NAA16	Q6N069	864 aa	Predicted RBP	13.91	□□□□□ -0.18
SF3B2-208	ENST00000529994	EDC3	Q96F86	508 aa	Known RBP	13.91	□□□□□ -0.18
SF3B2-208	ENST00000529994	PRUNE2	Q8WUY3	3088 aa		13.91	□□□□□ -0.18
SF3B2-208	ENST00000529994	FLT1	P17948	1338 aa		13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	BAG3	O95817	575 aa		13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	ZNF697	Q5TEC3	545 aa		13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	MFSD14C	Q5VZR4	134 aa		13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	FAM109B	Q6ICB4	259 aa	Predicted RBP	13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	ADGRA1	Q86SQ6	560 aa		13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	MYH1	P12882	1939 aa		13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	LTBP2	Q14767	1821 aa		13.9	□□□□□ -0.18
SF3B2-208	ENST00000529994	BCAR3	O75815	825 aa		13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	CNMD	O75829	334 aa		13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	GH2	P01242	217 aa		13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	USP17L2	Q6R6M4	530 aa		13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	FEZ1	Q99689	392 aa		13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	PRKAG2	Q9UGJ0	569 aa		13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	DDX20	Q9UHI6	824 aa	Known RBP	13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	TNN	Q9UQP3	1299 aa		13.89	□□□□□ -0.19
SF3B2-208	ENST00000529994	UQCRFS1P1	P0C7P4	283 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	PLCG2	P16885	1265 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	CYP2C19	P33261	490 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	RTP1	P59025	263 aa		13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	DYNLL1	P63167	89 aa	Known RBP	13.88	□□□□□ -0.19
SF3B2-208	ENST00000529994	ATP2B2	Q01814	1243 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms