RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 HHIPL1Q96JK4 782 aa16.69■□□□□ 0.26
USF1-209ENST00000529476 ROBO3Q96MS0 1386 aa16.68■□□□□ 0.26
USF1-209ENST00000529476 SHMT1P34896 483 aa16.68■□□□□ 0.26
USF1-209ENST00000529476 VGLL4Q14135 290 aa16.68■□□□□ 0.26
USF1-209ENST00000529476 PRPF38BQ5VTL8 546 aaKnown RBP16.68■□□□□ 0.26
USF1-209ENST00000529476 KIAA1211Q6ZU35 1233 aa16.68■□□□□ 0.26
USF1-209ENST00000529476 C16orf86Q6ZW13 317 aa16.68■□□□□ 0.26
USF1-209ENST00000529476 ANKRD13AQ8IZ07 590 aa16.68■□□□□ 0.26
USF1-209ENST00000529476 LSG1Q9H089 658 aaKnown RBP16.68■□□□□ 0.26
USF1-209ENST00000529476 CDK8P49336 464 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 HAND2P61296 217 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 CTDSPL2Q05D32 466 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 SHROOM1Q2M3G4 852 aaPredicted RBP16.67■□□□□ 0.26
USF1-209ENST00000529476 TATDN1Q6P1N9 297 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 ELP3Q9H9T3 547 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 ANO2Q9NQ90 1003 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 SWAP70Q9UH65 585 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 CSADQ9Y600 493 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 SNCAIPQ9Y6H5 919 aa16.67■□□□□ 0.26
USF1-209ENST00000529476 CTNND1O60716 968 aaKnown RBP16.66■□□□□ 0.26
USF1-209ENST00000529476 GDF11O95390 407 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 CAP2P40123 477 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 ZNF157P51786 506 aaPredicted RBP16.66■□□□□ 0.26
USF1-209ENST00000529476 JAG1P78504 1218 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 NOL9Q5SY16 702 aaKnown RBP16.66■□□□□ 0.26
USF1-209ENST00000529476 RGMBQ6NW40 437 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 SCYL3Q8IZE3 742 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 MAP4K1Q92918 833 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 NBPF3Q9H094 633 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 INCENPQ9NQS7 918 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.66■□□□□ 0.26
USF1-209ENST00000529476 CTNNA3Q9UI47 895 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 ANAPC4Q9UJX5 808 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 TACC3Q9Y6A5 838 aa16.66■□□□□ 0.26
USF1-209ENST00000529476 U3KPZ7 1027 aaPredicted RBP16.66■□□□□ 0.26
USF1-209ENST00000529476 UNCXA6NJT0 531 aa16.65■□□□□ 0.26
USF1-209ENST00000529476 PRDM1O75626 825 aa16.65■□□□□ 0.26
USF1-209ENST00000529476 SLC3A2P08195 630 aaKnown RBP16.65■□□□□ 0.26
USF1-209ENST00000529476 CERKLQ49MI3 558 aaPredicted RBP16.65■□□□□ 0.26
USF1-209ENST00000529476 CNKSR2Q8WXI2 1034 aa16.65■□□□□ 0.26
USF1-209ENST00000529476 SLC10A4Q96EP9 437 aa16.65■□□□□ 0.26
USF1-209ENST00000529476 TAOK2Q9UL54 1235 aa16.65■□□□□ 0.26
USF1-209ENST00000529476 RBM8AQ9Y5S9 174 aaKnown RBP16.65■□□□□ 0.26
USF1-209ENST00000529476 PHIPQ8WWQ0 1821 aa16.64■□□□□ 0.25
USF1-209ENST00000529476 ZNF213O14771 459 aa16.64■□□□□ 0.25
USF1-209ENST00000529476 IMMTQ16891 758 aaKnown RBP16.64■□□□□ 0.25
USF1-209ENST00000529476 RASAL3Q86YV0 1011 aa16.64■□□□□ 0.25
USF1-209ENST00000529476 TBC1D10CQ8IV04 446 aa16.64■□□□□ 0.25
USF1-209ENST00000529476 MKNK2Q9HBH9 465 aa16.64■□□□□ 0.25
USF1-209ENST00000529476 GH2P01242 217 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 AKR1B1P15121 316 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 RASA1P20936 1047 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 PDE4BQ07343 736 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 MKRN3Q13064 507 aaKnown RBP16.63■□□□□ 0.25
USF1-209ENST00000529476 NOGQ13253 232 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 ABCB5Q2M3G0 1257 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 CCDC84Q86UT8 332 aaPredicted RBP16.63■□□□□ 0.25
USF1-209ENST00000529476 OPTNQ96CV9 577 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 WNK4Q96J92 1243 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 PICK1Q9NRD5 415 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 ZBTB21Q9ULJ3 1066 aa16.63■□□□□ 0.25
USF1-209ENST00000529476 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.63■□□□□ 0.25
USF1-209ENST00000529476 SPDYE5A6NIY4 337 aa16.62■□□□□ 0.25
USF1-209ENST00000529476 FAM155AB1AL88 458 aaPredicted RBP16.62■□□□□ 0.25
USF1-209ENST00000529476 MPHOSPH10O00566 681 aaKnown RBP16.62■□□□□ 0.25
USF1-209ENST00000529476 CYP21A2P08686 494 aa16.62■□□□□ 0.25
USF1-209ENST00000529476 SLC10A3P09131 477 aa16.62■□□□□ 0.25
USF1-209ENST00000529476 PTPRAP18433 802 aa16.62■□□□□ 0.25
USF1-209ENST00000529476 GJA5P36382 358 aa16.62■□□□□ 0.25
USF1-209ENST00000529476 ERO1BQ86YB8 467 aa16.62■□□□□ 0.25
USF1-209ENST00000529476 CCDC102AQ96A19 550 aa16.62■□□□□ 0.25
USF1-209ENST00000529476 OTUD5Q96G74 571 aa16.62■□□□□ 0.25
USF1-209ENST00000529476 GREB1LQ9C091 1923 aaPredicted RBP16.61■□□□□ 0.25
USF1-209ENST00000529476 REC8O95072 547 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 ASNSP08243 561 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 FGRP09769 529 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 GUCY1A2P33402 732 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 NECTIN1Q15223 517 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 AKNAD1Q5T1N1 836 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 SPRYD7Q5W111 196 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 ZNF444Q8N0Y2 327 aaPredicted RBP16.61■□□□□ 0.25
USF1-209ENST00000529476 STAG1Q8WVM7 1258 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 CCDC17Q96LX7 622 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 ZNF287Q9HBT7 754 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 CABP5Q9NP86 173 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 TOMM22Q9NS69 142 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 TAF6LQ9Y6J9 622 aa16.61■□□□□ 0.25
USF1-209ENST00000529476 ORC4O43929 436 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 SEPT2Q15019 361 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 RAB3GAP1Q15042 981 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 C8orf34Q49A92 452 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 FAM47AQ5JRC9 791 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 RRP12Q5JTH9 1297 aaKnown RBP16.6■□□□□ 0.25
USF1-209ENST00000529476 MFSD6Q6ZSS7 791 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 NKX2-3Q8TAU0 364 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 RNF41Q9H4P4 317 aaPredicted RBP16.6■□□□□ 0.25
USF1-209ENST00000529476 GINM1Q9NU53 330 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 ZHX2Q9Y6X8 837 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 NEDD4P46934 1319 aa16.6■□□□□ 0.25
USF1-209ENST00000529476 USP17L5A8MUK1 530 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms