RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	PTPDC1	A2A3K4	754 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	SPDYE2B	A6NHP3	402 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	NFKBIE	O00221	500 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	LARGE1	O95461	756 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	SPDYE6	P0CI01	402 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	CDK8	P49336	464 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	CCT2	P78371	535 aa	Known RBP	11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	SSRP1	Q08945	709 aa	Known RBP	11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	FAM83A	Q86UY5	434 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	MICU3	Q86XE3	530 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	ZNF654	Q8IZM8	581 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	FAM177A1	Q8N128	213 aa	Predicted RBP	11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	ENAH	Q8N8S7	591 aa	Predicted RBP	11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	FANCB	Q8NB91	859 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	NEDD1	Q8NHV4	660 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	KCNQ5	Q9NR82	932 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	BRPF3	Q9ULD4	1205 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	STK36	Q9NRP7	1315 aa		11.05	□□□□□ -0.64
TPM3-222	ENST00000515609	CYP2D7	A0A087X1C5	515 aa		11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	VPS37C	A5D8V6	355 aa	Predicted RBP	11.04	□□□□□ -0.64
TPM3-222	ENST00000515609		H7C1D1	291 aa		11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	FZD9	O00144	591 aa		11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	IFNAR1	P17181	557 aa		11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	MCM4	P33991	863 aa		11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	SEC23A	Q15436	765 aa		11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	ARHGAP27	Q6ZUM4	889 aa		11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	NSUN7	Q8NE18	718 aa	Known RBP	11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	MXD3	Q9BW11	206 aa		11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	ORC3	Q9UBD5	711 aa	Predicted RBP	11.04	□□□□□ -0.64
TPM3-222	ENST00000515609	ATRNL1	Q5VV63	1379 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	PRDM1	O75626	825 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	F13A1	P00488	732 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	CYP2D6	P10635	497 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	TOP1	P11387	765 aa	Known RBP	11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	RASA1	P20936	1047 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	PLCD1	P51178	756 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	ZNF280A	P59817	542 aa	Predicted RBP	11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	SAFB	Q15424	915 aa	Known RBP eCLIP	11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	STK11IP	Q8N1F8	1099 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	NUP133	Q8WUM0	1156 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	FAM151A	Q8WW52	585 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	C8orf76	Q96K31	380 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	RNF26	Q9BY78	433 aa	Predicted RBP	11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	CFAP45	Q9UL16	551 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	SYNPO2	Q9UMS6	1093 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	HPS5	Q9UPZ3	1129 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	PLIN4	Q96Q06	1357 aa		11.03	□□□□□ -0.64
TPM3-222	ENST00000515609	FOCAD	Q5VW36	1801 aa		11.02	□□□□□ -0.64
TPM3-222	ENST00000515609	DEXI	O95424	95 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	BAG4	O95429	457 aa	Known RBP	11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	SMARCA1	P28370	1054 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	GABPA	Q06546	454 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	SPDYE2	Q495Y8	402 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	GPC2	Q8N158	579 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	PNMA1	Q8ND90	353 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	NLGN2	Q8NFZ4	835 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	PRMT6	Q96LA8	375 aa	Predicted RBP	11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	ZKSCAN3	Q9BRR0	538 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	SYT17	Q9BSW7	474 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	SCAND2P	Q9GZW5	306 aa	Predicted RBP	11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	TDRD3	Q9H7E2	651 aa	Known RBP	11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	NCOA5	Q9HCD5	579 aa	Known RBP	11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	CABP5	Q9NP86	173 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	MYOZ2	Q9NPC6	264 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	GINM1	Q9NU53	330 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	ZNF70	Q9UC06	446 aa	Predicted RBP	11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	STX8	Q9UNK0	236 aa		11.02	□□□□□ -0.65
TPM3-222	ENST00000515609	MYH1	P12882	1939 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	GRIN3B	O60391	1043 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	FMNL1	O95466	1100 aa	Predicted RBP	11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	TTLL1	O95922	423 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	KRT85	P78386	507 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	TROAP	Q12815	778 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	GNL2	Q13823	731 aa	Known RBP	11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	CERKL	Q49MI3	558 aa	Predicted RBP	11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	FAM47A	Q5JRC9	791 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	DPY19L2	Q6NUT2	758 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	TMEM179	Q6ZVK1	233 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	BRAP	Q7Z569	592 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	METTL16	Q86W50	562 aa	Known RBP	11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	DDX11	Q96FC9	970 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	DYNLL2	Q96FJ2	89 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	ZNF396	Q96N95	335 aa	Predicted RBP	11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	CSRNP1	Q96S65	589 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	KANSL2	Q9H9L4	492 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	BRMS1	Q9HCU9	246 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	INCENP	Q9NQS7	918 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	MTMR6	Q9Y217	621 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	SCN9A	Q15858	1988 aa		11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	DDX60L	Q5H9U9	1706 aa	Known RBP	11.01	□□□□□ -0.65
TPM3-222	ENST00000515609	PRPF3	O43395	683 aa	Known RBP	11	□□□□□ -0.65
TPM3-222	ENST00000515609	TBC1D12	O60347	775 aa		11	□□□□□ -0.65
TPM3-222	ENST00000515609	MBD3	O95983	291 aa		11	□□□□□ -0.65
TPM3-222	ENST00000515609	LMOD1	P29536	600 aa	Predicted RBP	11	□□□□□ -0.65
TPM3-222	ENST00000515609	ADD1	P35611	737 aa	Known RBP	11	□□□□□ -0.65
TPM3-222	ENST00000515609	ST3GAL1	Q11201	340 aa		11	□□□□□ -0.65
TPM3-222	ENST00000515609	TCP10	Q12799	353 aa		11	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms