RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 FBXO41Q8TF61 875 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 TMEM40Q8WWA1 233 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 ERBINQ96RT1 1412 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 KRTAP4-9Q9BYQ8 210 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 CCDC87Q9NVE4 849 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.8□□□□□ -1.32
NUP54-206ENST00000508465 CROCC2H7BZ55 1655 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 RNF17Q9BXT8 1623 aaKnown RBP6.79□□□□□ -1.32
NUP54-206ENST00000508465 A2ML1A8K2U0 1454 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 ADGRL2O95490 1459 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 ECEL1O95672 775 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 FAM87AP0C7U9 286 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 CD8BP10966 210 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 LTKP29376 864 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 FBLN7Q53RD9 439 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 KIAA0319Q5VV43 1072 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 ARHGAP27Q6ZUM4 889 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 PLD6Q8N2A8 252 aaKnown RBP6.79□□□□□ -1.32
NUP54-206ENST00000508465 WDR18Q9BV38 432 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 EHD4Q9H223 541 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 PPP1R9AQ9ULJ8 1098 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 NUP155O75694 1391 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 ROCK1Q13464 1354 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 CEP152O94986 1710 aa6.79□□□□□ -1.32
NUP54-206ENST00000508465 PTPRTO14522 1441 aa6.78□□□□□ -1.32
NUP54-206ENST00000508465 ABL1P00519 1130 aa6.78□□□□□ -1.32
NUP54-206ENST00000508465 PRKCQQ04759 706 aa6.78□□□□□ -1.32
NUP54-206ENST00000508465 GLIS3Q8NEA6 775 aa6.78□□□□□ -1.32
NUP54-206ENST00000508465 ATXN3LQ9H3M9 355 aa6.78□□□□□ -1.32
NUP54-206ENST00000508465 ZNF576Q9H609 170 aa6.78□□□□□ -1.32
NUP54-206ENST00000508465 ERVK-7P63135 1459 aa6.78□□□□□ -1.32
NUP54-206ENST00000508465 CEP170BQ9Y4F5 1589 aaPredicted RBP6.78□□□□□ -1.32
NUP54-206ENST00000508465 RRBP1Q9P2E9 1410 aaKnown RBP6.77□□□□□ -1.33
NUP54-206ENST00000508465 MYO3AQ8NEV4 1616 aa6.77□□□□□ -1.33
NUP54-206ENST00000508465 EIF2AK4Q9P2K8 1649 aaKnown RBP6.77□□□□□ -1.33
NUP54-206ENST00000508465 RNASE1P07998 156 aaKnown RBP6.77□□□□□ -1.33
NUP54-206ENST00000508465 ITPKAP23677 461 aa6.77□□□□□ -1.33
NUP54-206ENST00000508465 PTPN12Q05209 780 aaKnown RBP6.77□□□□□ -1.33
NUP54-206ENST00000508465 IFI16Q16666 785 aaKnown RBP6.77□□□□□ -1.33
NUP54-206ENST00000508465 WFDC3Q8IUB2 231 aa6.77□□□□□ -1.33
NUP54-206ENST00000508465 MKNK2Q9HBH9 465 aa6.77□□□□□ -1.33
NUP54-206ENST00000508465 ARHGAP31Q2M1Z3 1444 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 TMPRSS2O15393 492 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 CDK5R2Q13319 367 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 AOC3Q16853 763 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 SMYD4Q8IYR2 804 aaPredicted RBP6.76□□□□□ -1.33
NUP54-206ENST00000508465 FAM181AQ8N9Y4 354 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 HRASLS5Q96KN8 279 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 SLC26A8Q96RN1 970 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 MBNL3Q9NUK0 354 aaKnown RBP6.76□□□□□ -1.33
NUP54-206ENST00000508465 CRIM1Q9NZV1 1036 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 EID1Q9Y6B2 187 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 NLRP1Q9C000 1473 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 FAM135AQ9P2D6 1515 aa6.76□□□□□ -1.33
NUP54-206ENST00000508465 UGGT1Q9NYU2 1555 aa6.75□□□□□ -1.33
NUP54-206ENST00000508465 TMEM265A0A087WTH1 108 aa6.75□□□□□ -1.33
NUP54-206ENST00000508465 RNGTTO60942 597 aaKnown RBP6.75□□□□□ -1.33
NUP54-206ENST00000508465 LIG1P18858 919 aa6.75□□□□□ -1.33
NUP54-206ENST00000508465 ID3Q02535 119 aa6.75□□□□□ -1.33
NUP54-206ENST00000508465 FANCD2OSQ96PS1 177 aa6.75□□□□□ -1.33
NUP54-206ENST00000508465 SLC52A1Q9NWF4 448 aa6.75□□□□□ -1.33
NUP54-206ENST00000508465 BRPF3Q9ULD4 1205 aa6.75□□□□□ -1.33
NUP54-206ENST00000508465 PRDM15P57071 1507 aaPredicted RBP6.75□□□□□ -1.33
NUP54-206ENST00000508465 NAIPQ13075 1403 aa6.75□□□□□ -1.33
NUP54-206ENST00000508465 SPATA31D1Q6ZQQ2 1576 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 TMEM88BA6NKF7 163 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 RPS26P11Q5JNZ5 115 aaPredicted RBP6.74□□□□□ -1.33
NUP54-206ENST00000508465 ANGEL2Q5VTE6 544 aaKnown RBP6.74□□□□□ -1.33
NUP54-206ENST00000508465 LRRN4CLQ8ND94 238 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 FAM84AQ96KN4 292 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 ANO2Q9NQ90 1003 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 FAM53CQ9NYF3 392 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 PCOLCE2Q9UKZ9 415 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 DEPDC5O75140 1603 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 NPHP4O75161 1426 aaPredicted RBP6.74□□□□□ -1.33
NUP54-206ENST00000508465 VWDEQ8N2E2 1590 aa6.74□□□□□ -1.33
NUP54-206ENST00000508465 PLA2R1Q13018 1463 aa6.73□□□□□ -1.33
NUP54-206ENST00000508465 TMEM2Q9UHN6 1383 aa6.73□□□□□ -1.33
NUP54-206ENST00000508465 LMTK2Q8IWU2 1503 aa6.73□□□□□ -1.33
NUP54-206ENST00000508465 CPNE3O75131 537 aaKnown RBP6.73□□□□□ -1.33
NUP54-206ENST00000508465 KRTAP19-4Q3LI73 84 aa6.73□□□□□ -1.33
NUP54-206ENST00000508465 BHLHE22Q8NFJ8 381 aaPredicted RBP6.73□□□□□ -1.33
NUP54-206ENST00000508465 ZC3H12CQ9C0D7 883 aaKnown RBP6.73□□□□□ -1.33
NUP54-206ENST00000508465 CCDC86Q9H6F5 360 aaKnown RBP6.73□□□□□ -1.33
NUP54-206ENST00000508465 SSU72Q9NP77 194 aaKnown RBP6.73□□□□□ -1.33
NUP54-206ENST00000508465 ADAMTS6Q9UKP5 1117 aa6.73□□□□□ -1.33
NUP54-206ENST00000508465 ZC3H13Q5T200 1668 aaKnown RBP6.73□□□□□ -1.33
NUP54-206ENST00000508465 NOS1P29475 1434 aa6.73□□□□□ -1.33
NUP54-206ENST00000508465 ZNF142P52746 1687 aaPredicted RBP6.72□□□□□ -1.33
NUP54-206ENST00000508465 PPP1R15AO75807 674 aaPredicted RBP6.72□□□□□ -1.33
NUP54-206ENST00000508465 CEACAM5P06731 702 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 PDE3BQ13370 1112 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 ZNF326Q5BKZ1 582 aaKnown RBP6.72□□□□□ -1.33
NUP54-206ENST00000508465 USPL1Q5W0Q7 1092 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 SLC23A3Q6PIS1 610 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 SPOCD1Q6ZMY3 1216 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 WDR89Q96FK6 387 aaPredicted RBP6.72□□□□□ -1.33
NUP54-206ENST00000508465 DISC1Q9NRI5 854 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 KRT82Q9NSB4 513 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 TRAK1Q9UPV9 953 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms