RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 TBC1D22AQ8WUA7 517 aa9.27□□□□□ -0.93
COL9A1-209ENST00000489861 ANKS1AQ92625 1134 aa9.27□□□□□ -0.93
COL9A1-209ENST00000489861 UIMC1Q96RL1 719 aa9.27□□□□□ -0.93
COL9A1-209ENST00000489861 MBIPQ9NS73 344 aa9.27□□□□□ -0.93
COL9A1-209ENST00000489861 TACC3Q9Y6A5 838 aa9.27□□□□□ -0.93
COL9A1-209ENST00000489861 DCHS1Q96JQ0 3298 aa9.27□□□□□ -0.93
COL9A1-209ENST00000489861 UTYO14607 1347 aa9.27□□□□□ -0.93
COL9A1-209ENST00000489861 MSCO60682 206 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 CLTBP09497 229 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 RAG1P15918 1043 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 MAPK4P31152 587 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 FOXK2Q01167 660 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 NEXNQ0ZGT2 675 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 MAP2K5Q13163 448 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 SKIV2LQ15477 1246 aaKnown RBP9.26□□□□□ -0.93
COL9A1-209ENST00000489861 DIXDC1Q155Q3 683 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 ANO1Q5XXA6 986 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 LDHAL6AQ6ZMR3 332 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 ARRDC4Q8NCT1 418 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 GPRC5AQ8NFJ5 357 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 HERVK_113Q902F9 699 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 NKX2-4Q9H2Z4 354 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 RBPJLQ9UBG7 517 aa9.26□□□□□ -0.93
COL9A1-209ENST00000489861 YBX2Q9Y2T7 364 aaKnown RBP9.26□□□□□ -0.93
COL9A1-209ENST00000489861 LRRFIP2Q9Y608 721 aaKnown RBP9.26□□□□□ -0.93
COL9A1-209ENST00000489861 A0A0G2JMZ2 1700 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 DDTLA6NHG4 134 aaPredicted RBP9.25□□□□□ -0.93
COL9A1-209ENST00000489861 KBTBD13C9JR72 458 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 IGHA2P01877 340 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 CYP2C19P33261 490 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 RALBP1Q15311 655 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 TMEM240Q5SV17 173 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 MFSD14CQ5VZR4 134 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 PLEKHH3Q7Z736 793 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 EDC3Q96F86 508 aaKnown RBP9.25□□□□□ -0.93
COL9A1-209ENST00000489861 PUS3Q9BZE2 481 aaKnown RBP9.25□□□□□ -0.93
COL9A1-209ENST00000489861 CNNM1Q9NRU3 951 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 CHMP3Q9Y3E7 222 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 NDUFB9Q9Y6M9 179 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 MAST3O60307 1309 aa9.25□□□□□ -0.93
COL9A1-209ENST00000489861 FAM196BA6NMK8 535 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 ST18O60284 1047 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 MYCNP04198 464 aaPredicted RBP9.24□□□□□ -0.93
COL9A1-209ENST00000489861 CYBAP13498 195 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 RGS3P49796 1198 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 HERVK_113P62684 666 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 PABPC4Q13310 644 aaKnown RBP eCLIP9.24□□□□□ -0.93
COL9A1-209ENST00000489861 EPHA10Q5JZY3 1008 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 ZNF280CQ8ND82 737 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 NPLOC4Q8TAT6 608 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 CHMP4AQ9BY43 222 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 USP40Q9NVE5 1235 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 SUGT1Q9Y2Z0 365 aa9.24□□□□□ -0.93
COL9A1-209ENST00000489861 KMT2BQ9UMN6 2715 aaPredicted RBP9.24□□□□□ -0.93
COL9A1-209ENST00000489861 RFXAPO00287 272 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 FRAT2O75474 233 aaPredicted RBP9.23□□□□□ -0.93
COL9A1-209ENST00000489861 ERVK-9P63128 1117 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 ERVK-24P63145 666 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 IRX3P78415 501 aaPredicted RBP9.23□□□□□ -0.93
COL9A1-209ENST00000489861 LRRC41Q15345 812 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 SH3D19Q5HYK7 790 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 KRT40Q6A162 431 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 LMBR1LQ6UX01 489 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 G2E3Q7L622 706 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 VPS37DQ86XT2 251 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 C8orf58Q8NAV2 365 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 KCNH6Q9H252 994 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 SLC28A3Q9HAS3 691 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 TMEM39AQ9NV64 488 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 MSRAQ9UJ68 235 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 MTCH2Q9Y6C9 303 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 CHD8Q9HCK8 2581 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 MYBBP1AQ9BQG0 1328 aaKnown RBP9.23□□□□□ -0.93
COL9A1-209ENST00000489861 TECTAO75443 2155 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 RFX7Q2KHR2 1363 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 PKD1L2Q7Z442 2459 aa9.23□□□□□ -0.93
COL9A1-209ENST00000489861 ZNFX1Q9P2E3 1918 aaKnown RBP9.23□□□□□ -0.93
COL9A1-209ENST00000489861 PQBP1O60828 265 aaKnown RBP9.22□□□□□ -0.93
COL9A1-209ENST00000489861 ZNF853P0CG23 659 aa9.22□□□□□ -0.93
COL9A1-209ENST00000489861 ACRP10323 421 aa9.22□□□□□ -0.93
COL9A1-209ENST00000489861 HOXA7P31268 230 aaPredicted RBP9.22□□□□□ -0.93
COL9A1-209ENST00000489861 ATP2B2Q01814 1243 aa9.22□□□□□ -0.93
COL9A1-209ENST00000489861 FAAP100Q0VG06 881 aa9.22□□□□□ -0.93
COL9A1-209ENST00000489861 RRP1BQ14684 758 aaKnown RBP9.22□□□□□ -0.93
COL9A1-209ENST00000489861 RAB30Q15771 203 aa9.22□□□□□ -0.93
COL9A1-209ENST00000489861 ZNF365Q70YC5 407 aa9.22□□□□□ -0.93
COL9A1-209ENST00000489861 PAGR1Q9BTK6 254 aa9.22□□□□□ -0.93
COL9A1-209ENST00000489861 COG5Q9UP83 839 aa9.22□□□□□ -0.93
COL9A1-209ENST00000489861 ENTPD3O75355 529 aa9.21□□□□□ -0.94
COL9A1-209ENST00000489861 TIMP1P01033 207 aa9.21□□□□□ -0.94
COL9A1-209ENST00000489861 HOXC6P09630 235 aa9.21□□□□□ -0.94
COL9A1-209ENST00000489861 MYOGP15173 224 aa9.21□□□□□ -0.94
COL9A1-209ENST00000489861 POU3F3P20264 500 aaPredicted RBP9.21□□□□□ -0.94
COL9A1-209ENST00000489861 CCDC57Q2TAC2 916 aa9.21□□□□□ -0.94
COL9A1-209ENST00000489861 TAF7LQ5H9L4 462 aa9.21□□□□□ -0.94
COL9A1-209ENST00000489861 CCDC30Q5VVM6 783 aa9.21□□□□□ -0.94
COL9A1-209ENST00000489861 ZSCAN29Q8IWY8 852 aaPredicted RBP9.21□□□□□ -0.94
COL9A1-209ENST00000489861 CCAR1Q8IX12 1150 aaKnown RBP9.21□□□□□ -0.94
COL9A1-209ENST00000489861 CCDC146Q8IYE0 955 aa9.21□□□□□ -0.94
COL9A1-209ENST00000489861 SLC44A5Q8NCS7 719 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms