RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 RANBP6O60518 1105 aaKnown RBP16.39■□□□□ 0.21
C9orf3-221ENST00000489562 PRDM1O75626 825 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 MCM5P33992 734 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 IREB2P48200 963 aaKnown RBP16.39■□□□□ 0.21
C9orf3-221ENST00000489562 FKBP1BP68106 108 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 ADCK5Q3MIX3 580 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 CCDC178Q5BJE1 867 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 PPP4R3BQ5MIZ7 849 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 MB21D2Q8IYB1 491 aaPredicted RBP16.39■□□□□ 0.21
C9orf3-221ENST00000489562 ZNF112Q9UJU3 913 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 TACC3Q9Y6A5 838 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 UNCXA6NJT0 531 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 PHF20L1A8MW92 1017 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 CTNND1O60716 968 aaKnown RBP16.38■□□□□ 0.21
C9orf3-221ENST00000489562 KDM4AO75164 1064 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 ITGBL1O95965 494 aaPredicted RBP16.38■□□□□ 0.21
C9orf3-221ENST00000489562 TSPY3P0CV98 308 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 TSPY8P0CW00 308 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 CASTP20810 708 aaKnown RBP16.38■□□□□ 0.21
C9orf3-221ENST00000489562 RABEP1Q15276 862 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 MAP3K11Q16584 847 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 DHX32Q7L7V1 743 aaKnown RBP16.38■□□□□ 0.21
C9orf3-221ENST00000489562 ARMC9Q7Z3E5 817 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 IQCA1Q86XH1 822 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 NEDD1Q8NHV4 660 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 KLRG1Q96E93 195 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 ZSWIM6Q9HCJ5 1215 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 CABP5Q9NP86 173 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 INCENPQ9NQS7 918 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 CYP46A1Q9Y6A2 500 aa16.38■□□□□ 0.21
C9orf3-221ENST00000489562 TRAF5O00463 557 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 CAP2P40123 477 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 TFAP4Q01664 338 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 FSTL1Q12841 308 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 SART3Q15020 963 aaKnown RBP16.37■□□□□ 0.21
C9orf3-221ENST00000489562 ABCB5Q2M3G0 1257 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 TMEM179Q6ZVK1 233 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 RUFY3Q7L099 469 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 WRNIP1Q96S55 665 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 TCP11L1Q9NUJ3 509 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 ZSWIM5Q9P217 1185 aa16.37■□□□□ 0.21
C9orf3-221ENST00000489562 USP2O75604 605 aaPredicted RBP16.36■□□□□ 0.21
C9orf3-221ENST00000489562 ASNSP08243 561 aa16.36■□□□□ 0.21
C9orf3-221ENST00000489562 AKR1B1P15121 316 aa16.36■□□□□ 0.21
C9orf3-221ENST00000489562 RPS6KB1P23443 525 aa16.36■□□□□ 0.21
C9orf3-221ENST00000489562 NOL9Q5SY16 702 aaKnown RBP16.36■□□□□ 0.21
C9orf3-221ENST00000489562 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.36■□□□□ 0.21
C9orf3-221ENST00000489562 TMEM87BQ96K49 555 aa16.36■□□□□ 0.21
C9orf3-221ENST00000489562 KIF2CQ99661 725 aa16.36■□□□□ 0.21
C9orf3-221ENST00000489562 UBAC1Q9BSL1 405 aa16.36■□□□□ 0.21
C9orf3-221ENST00000489562 ERICH2A1L162 156 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 MPHOSPH10O00566 681 aaKnown RBP16.35■□□□□ 0.21
C9orf3-221ENST00000489562 PRC1O43663 620 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 SLURP2P0DP57 97 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 MAP3K9P80192 1104 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 TTLL12Q14166 644 aaPredicted RBP16.35■□□□□ 0.21
C9orf3-221ENST00000489562 FAM47AQ5JRC9 791 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 DLK2Q6UY11 383 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 SCYL3Q8IZE3 742 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 C2orf69Q8N8R5 385 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 GBA2Q9HCG7 927 aaPredicted RBP16.35■□□□□ 0.21
C9orf3-221ENST00000489562 ZBTB21Q9ULJ3 1066 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 ANGEL1Q9UNK9 670 aaKnown RBP16.35■□□□□ 0.21
C9orf3-221ENST00000489562 PASKQ96RG2 1323 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 PHIPQ8WWQ0 1821 aa16.35■□□□□ 0.21
C9orf3-221ENST00000489562 CELF2O95319 508 aaKnown RBP16.34■□□□□ 0.21
C9orf3-221ENST00000489562 GDF11O95390 407 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 GH2P01242 217 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 ANTXR2P58335 489 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 EXOSC10Q01780 885 aaKnown RBP16.34■□□□□ 0.21
C9orf3-221ENST00000489562 CYB5R4Q7L1T6 521 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 ANKRD13AQ8IZ07 590 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 FBXL16Q8N461 479 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 ZSCAN10Q96SZ4 725 aaPredicted RBP16.34■□□□□ 0.21
C9orf3-221ENST00000489562 TBC1D2Q9BYX2 928 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 UPF3BQ9BZI7 483 aaKnown RBP16.34■□□□□ 0.21
C9orf3-221ENST00000489562 ZNF408Q9H9D4 720 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 KANSL2Q9H9L4 492 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 CSADQ9Y600 493 aa16.34■□□□□ 0.21
C9orf3-221ENST00000489562 IGKV6D-41A0A0C4DH26 115 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 IFIT3O14879 490 aaKnown RBP16.33■□□□□ 0.2
C9orf3-221ENST00000489562 INPP5BP32019 993 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 NEK4P51957 841 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 FGD1P98174 961 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 PRKG1Q13976 671 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 RRP1BQ14684 758 aaKnown RBP16.33■□□□□ 0.2
C9orf3-221ENST00000489562 DGKHQ86XP1 1220 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 TMTC2Q8N394 836 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 TTC14Q96N46 770 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 ALDH8A1Q9H2A2 487 aaPredicted RBP16.33■□□□□ 0.2
C9orf3-221ENST00000489562 PICK1Q9NRD5 415 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 PDRG1Q9NUG6 133 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 TNKSO95271 1327 aa16.33■□□□□ 0.2
C9orf3-221ENST00000489562 ST18O60284 1047 aa16.32■□□□□ 0.2
C9orf3-221ENST00000489562 NOVP48745 357 aa16.32■□□□□ 0.2
C9orf3-221ENST00000489562 ANKRD1Q15327 319 aa16.32■□□□□ 0.2
C9orf3-221ENST00000489562 TMEM67Q5HYA8 995 aa16.32■□□□□ 0.2
C9orf3-221ENST00000489562 LDLRAD1Q5T700 205 aa16.32■□□□□ 0.2
C9orf3-221ENST00000489562 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.32■□□□□ 0.2
C9orf3-221ENST00000489562 MTMR4Q9NYA4 1195 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms