RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 DDX11L8A8MPP1 907 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 MINDY4BA8MYZ0 360 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 UBE2Q2LH0YL09 131 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 STK3Q13188 491 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 DLGAP5Q15398 846 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 RGMBQ6NW40 437 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 CTR9Q6PD62 1173 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 CYB5R4Q7L1T6 521 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 HDAC9Q9UKV0 1011 aa14.93□□□□□ -0.02
NELFE-209ENST00000488426 FOCADQ5VW36 1801 aa14.92□□□□□ -0.02
NELFE-209ENST00000488426 SH2B2O14492 632 aaPredicted RBP14.92□□□□□ -0.02
NELFE-209ENST00000488426 FGRP09769 529 aa14.92□□□□□ -0.02
NELFE-209ENST00000488426 PDCP20941 246 aa14.92□□□□□ -0.02
NELFE-209ENST00000488426 PDIA3P30101 505 aaKnown RBP14.92□□□□□ -0.02
NELFE-209ENST00000488426 NT5C2P49902 561 aa14.92□□□□□ -0.02
NELFE-209ENST00000488426 PRKG1Q13976 671 aa14.92□□□□□ -0.02
NELFE-209ENST00000488426 SH3RF3Q8TEJ3 882 aaPredicted RBP14.92□□□□□ -0.02
NELFE-209ENST00000488426 TTF2Q9UNY4 1162 aaKnown RBP14.92□□□□□ -0.02
NELFE-209ENST00000488426 DDX60LQ5H9U9 1706 aaKnown RBP14.92□□□□□ -0.02
NELFE-209ENST00000488426 SPDYE2BA6NHP3 402 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 USP17L12C9JPN9 530 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 USP17L21D6R901 530 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 KDM4AO75164 1064 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 SLC3A2P08195 630 aaKnown RBP14.91□□□□□ -0.02
NELFE-209ENST00000488426 SPDYE6P0CI01 402 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 HSPA8P11142 646 aaKnown RBP14.91□□□□□ -0.02
NELFE-209ENST00000488426 PTMSP20962 102 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 MAP2K2P36507 400 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 BTDP43251 543 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 USP5P45974 858 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 ZNF157P51786 506 aaPredicted RBP14.91□□□□□ -0.02
NELFE-209ENST00000488426 MAP2K1Q02750 393 aaPredicted RBP14.91□□□□□ -0.02
NELFE-209ENST00000488426 SCRN1Q12765 414 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 MTMR14Q8NCE2 650 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 ZSWIM5Q9P217 1185 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 TACC3Q9Y6A5 838 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 KLF18A0A0U1RQI7 1052 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 SYT1P21579 422 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 LIFRP42702 1097 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 RBM5P52756 815 aaKnown RBP eCLIP14.91□□□□□ -0.02
NELFE-209ENST00000488426 SART3Q15020 963 aaKnown RBP14.91□□□□□ -0.02
NELFE-209ENST00000488426 IGDCC4Q8TDY8 1250 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 ESR2Q92731 530 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 DEFB129Q9H1M3 183 aa14.91□□□□□ -0.02
NELFE-209ENST00000488426 STX6O43752 255 aa14.9□□□□□ -0.02
NELFE-209ENST00000488426 BAG4O95429 457 aaKnown RBP14.9□□□□□ -0.02
NELFE-209ENST00000488426 SGMS1Q86VZ5 419 aa14.9□□□□□ -0.02
NELFE-209ENST00000488426 CDAN1Q8IWY9 1227 aa14.9□□□□□ -0.02
NELFE-209ENST00000488426 AMOTL1Q8IY63 956 aa14.9□□□□□ -0.02
NELFE-209ENST00000488426 SMARCC2Q8TAQ2 1214 aa14.9□□□□□ -0.02
NELFE-209ENST00000488426 GPHNQ9NQX3 736 aaPredicted RBP14.9□□□□□ -0.02
NELFE-209ENST00000488426 TOMM22Q9NS69 142 aa14.9□□□□□ -0.02
NELFE-209ENST00000488426 THSD7BQ9C0I4 1608 aa14.9□□□□□ -0.02
NELFE-209ENST00000488426 ROBO3Q96MS0 1386 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 GOLGA8BA8MQT2 603 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 GOLGA6L22H0YM25 854 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 ORC4O43929 436 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 DHX16O60231 1041 aaKnown RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 CTCFP49711 727 aaPredicted RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 HMGN5P82970 282 aaKnown RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 KIF23Q02241 960 aaPredicted RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 TMEM67Q5HYA8 995 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 RRP12Q5JTH9 1297 aaKnown RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 NKX2-3Q8TAU0 364 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 TDRD3Q9H7E2 651 aaKnown RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 LY9Q9HBG7 655 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 INCENPQ9NQS7 918 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 MCM9Q9NXL9 1143 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 BRPF3Q9ULD4 1205 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 NAP1L2Q9ULW6 460 aaPredicted RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 KIF3AQ9Y496 699 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 DAGLAQ9Y4D2 1042 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 IFIT3O14879 490 aaKnown RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 ZSCAN22P10073 491 aaPredicted RBP14.89□□□□□ -0.03
NELFE-209ENST00000488426 MMP14P50281 582 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 TEX11Q8IYF3 940 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 TNS4Q8IZW8 715 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 VEZTQ9HBM0 779 aa14.89□□□□□ -0.03
NELFE-209ENST00000488426 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.89□□□□□ -0.03
NELFE-209ENST00000488426 CYP2D7A0A087X1C5 515 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 ERICH2A1L162 156 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 CRKP46108 304 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 RHBDL3P58872 404 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 PDE4BQ07343 736 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 NOGQ13253 232 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 NBPF12Q5TAG4 269 aaPredicted RBP14.88□□□□□ -0.03
NELFE-209ENST00000488426 C12orf60Q5U649 245 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 HHIPL2Q6UWX4 724 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 TMTC2Q8N394 836 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 NSUN7Q8NE18 718 aaKnown RBP14.88□□□□□ -0.03
NELFE-209ENST00000488426 MRIQ9BWK5 157 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 HPS5Q9UPZ3 1129 aa14.88□□□□□ -0.03
NELFE-209ENST00000488426 MYH1P12882 1939 aa14.87□□□□□ -0.03
NELFE-209ENST00000488426 SLC10A3P09131 477 aa14.87□□□□□ -0.03
NELFE-209ENST00000488426 CACNB3P54284 484 aa14.87□□□□□ -0.03
NELFE-209ENST00000488426 CCT2P78371 535 aaKnown RBP14.87□□□□□ -0.03
NELFE-209ENST00000488426 HDLBPQ00341 1268 aaKnown RBP14.87□□□□□ -0.03
NELFE-209ENST00000488426 TTLL12Q14166 644 aaPredicted RBP14.87□□□□□ -0.03
NELFE-209ENST00000488426 LARP1BQ659C4 914 aaKnown RBP14.87□□□□□ -0.03
NELFE-209ENST00000488426 APOA5Q6Q788 366 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms