RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ABCB6Q9NP58 842 aa15.12■□□□□ 0.01
USP40-214ENST00000483519 FAN1Q9Y2M0 1017 aa15.12■□□□□ 0.01
USP40-214ENST00000483519 SH2B2O14492 632 aaPredicted RBP15.11■□□□□ 0.01
USP40-214ENST00000483519 NOP2P46087 812 aaKnown RBP15.11■□□□□ 0.01
USP40-214ENST00000483519 WHAMMP3Q1A5X7 153 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 CT47A1Q5JQC4 288 aaPredicted RBP15.11■□□□□ 0.01
USP40-214ENST00000483519 APOA5Q6Q788 366 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 RAD9BQ6WBX8 426 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 RASGRP2Q7LDG7 609 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 PHKBQ93100 1093 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 TEX13AQ9BXU3 409 aaPredicted RBP15.11■□□□□ 0.01
USP40-214ENST00000483519 MED4Q9NPJ6 270 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 SAMSN1Q9NSI8 373 aaKnown RBP15.11■□□□□ 0.01
USP40-214ENST00000483519 CWC25Q9NXE8 425 aaPredicted RBP15.11■□□□□ 0.01
USP40-214ENST00000483519 CEP126Q9P2H0 1117 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 TTF2Q9UNY4 1162 aaKnown RBP15.11■□□□□ 0.01
USP40-214ENST00000483519 CTAGE15A4D2H0 777 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 CTAGE8P0CG41 777 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 POTEAQ6S8J7 498 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 CTAGE6Q86UF2 777 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 CTAGE4Q8IX94 777 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 IGSF22Q8N9C0 903 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 ABCC12Q96J65 1359 aa15.11■□□□□ 0.01
USP40-214ENST00000483519 POLR2DO15514 142 aaKnown RBP15.1■□□□□ 0.01
USP40-214ENST00000483519 GPAA1O43292 621 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 MAGEA9P43362 315 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 CASP8Q14790 479 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 NOSTRINQ8IVI9 506 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 CCDC102AQ96A19 550 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 CTAGE1Q96RT6 745 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 AKAP2Q9Y2D5 859 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 STK36Q9NRP7 1315 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 ZBTB43O43298 467 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 PRR29P0C7W0 189 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 SAFBQ15424 915 aaKnown RBP eCLIP15.1■□□□□ 0.01
USP40-214ENST00000483519 ZNF827Q17R98 1081 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 MICU3Q86XE3 530 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 CNGA4Q8IV77 575 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 STK11IPQ8N1F8 1099 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 WASF1Q92558 559 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 CCDC51Q96ER9 411 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 NAPGQ99747 312 aaPredicted RBP15.1■□□□□ 0.01
USP40-214ENST00000483519 PUS7LQ9H0K6 701 aaKnown RBP15.1■□□□□ 0.01
USP40-214ENST00000483519 SERTAD1Q9UHV2 236 aa15.1■□□□□ 0.01
USP40-214ENST00000483519 MFAP3LO75121 409 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 PHKG2P15735 406 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 PTPREP23469 700 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 RBL2Q08999 1139 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 FILIP1LQ4L180 1135 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 SPECC1Q5M775 1068 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 TMEM87BQ96K49 555 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 MYO1AQ9UBC5 1043 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 UBR2Q8IWV8 1755 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 ONECUT3O60422 494 aaPredicted RBP15.09■□□□□ 0.01
USP40-214ENST00000483519 N4BP1O75113 896 aaKnown RBP15.09■□□□□ 0.01
USP40-214ENST00000483519 RHOXF2BP0C7M4 288 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 RXRAP19793 462 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 VSNL1P62760 191 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 ZNF579Q8NAF0 562 aaKnown RBP15.09■□□□□ 0.01
USP40-214ENST00000483519 ZNF594Q96JF6 807 aaPredicted RBP15.09■□□□□ 0.01
USP40-214ENST00000483519 RHOXF2Q9BQY4 288 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP40-214ENST00000483519 FBXO2Q9UK22 296 aaPredicted RBP15.09■□□□□ 0.01
USP40-214ENST00000483519 UBN2Q6ZU65 1347 aa15.09■□□□□ 0.01
USP40-214ENST00000483519 GOLGA8AA7E2F4 631 aa15.08■□□□□ 0.01
USP40-214ENST00000483519 SLC9C2Q5TAH2 1124 aa15.08■□□□□ 0.01
USP40-214ENST00000483519 SPATA1Q5VX52 437 aa15.08■□□□□ 0.01
USP40-214ENST00000483519 NFXL1Q6ZNB6 911 aa15.08■□□□□ 0.01
USP40-214ENST00000483519 SSRP1Q08945 709 aaKnown RBP15.08■□□□□ 0
USP40-214ENST00000483519 NTRK3Q16288 839 aa15.08■□□□□ 0
USP40-214ENST00000483519 TTC31Q49AM3 519 aaPredicted RBP15.08■□□□□ 0
USP40-214ENST00000483519 HSP90AB3PQ58FF7 597 aa15.08■□□□□ 0
USP40-214ENST00000483519 RILPL1Q5EBL4 403 aa15.08■□□□□ 0
USP40-214ENST00000483519 CYB5R4Q7L1T6 521 aa15.08■□□□□ 0
USP40-214ENST00000483519 CNPY4Q8N129 248 aa15.08■□□□□ 0
USP40-214ENST00000483519 SLC35F6Q8N357 371 aa15.08■□□□□ 0
USP40-214ENST00000483519 MYH7P12883 1935 aa15.08■□□□□ 0
USP40-214ENST00000483519 GLI3P10071 1580 aa15.08■□□□□ 0
USP40-214ENST00000483519 SYNRGQ9UMZ2 1314 aa15.08■□□□□ 0
USP40-214ENST00000483519 IL2RBP14784 551 aa15.08■□□□□ 0
USP40-214ENST00000483519 TATP17735 454 aaPredicted RBP15.08■□□□□ 0
USP40-214ENST00000483519 SPATA20Q8TB22 786 aa15.08■□□□□ 0
USP40-214ENST00000483519 XAGE2Q96GT9 111 aa15.08■□□□□ 0
USP40-214ENST00000483519 MED15Q96RN5 788 aa15.08■□□□□ 0
USP40-214ENST00000483519 SUGCTQ9HAC7 445 aa15.08■□□□□ 0
USP40-214ENST00000483519 CEP131Q9UPN4 1083 aa15.08■□□□□ 0
USP40-214ENST00000483519 TJP1Q07157 1748 aa15.07■□□□□ 0
USP40-214ENST00000483519 SEMA3EO15041 775 aa15.07■□□□□ 0
USP40-214ENST00000483519 TEX33O43247 280 aa15.07■□□□□ 0
USP40-214ENST00000483519 RANBP6O60518 1105 aaKnown RBP15.07■□□□□ 0
USP40-214ENST00000483519 ADRA2BP18089 450 aa15.07■□□□□ 0
USP40-214ENST00000483519 PBX1P40424 430 aa15.07■□□□□ 0
USP40-214ENST00000483519 IRX3P78415 501 aaPredicted RBP15.07■□□□□ 0
USP40-214ENST00000483519 FAM98CQ17RN3 349 aaKnown RBP15.07■□□□□ 0
USP40-214ENST00000483519 WDR93Q6P2C0 686 aa15.07■□□□□ 0
USP40-214ENST00000483519 IFNL2Q8IZJ0 200 aa15.07■□□□□ 0
USP40-214ENST00000483519 CPLX3Q8WVH0 158 aa15.07■□□□□ 0
USP40-214ENST00000483519 PPM1EQ8WY54 764 aa15.07■□□□□ 0
USP40-214ENST00000483519 SLC26A6Q9BXS9 759 aa15.07■□□□□ 0
USP40-214ENST00000483519 NBPF3Q9H094 633 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms