RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 TNRQ92752 1358 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 ZBTB43O43298 467 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 SAFBQ15424 915 aaKnown RBP eCLIP21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 NOSTRINQ8IVI9 506 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 CAGE1Q8TC20 777 aa21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 ZNF496Q96IT1 587 aaPredicted RBP21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 ADD3Q9UEY8 706 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-207ENST00000479965 GPAA1O43292 621 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 PRPF6O94906 941 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 TUBBP07437 444 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 CD44P16070 742 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 MMS19Q96T76 1030 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 EID1Q9Y6B2 187 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 FAM169AQ9Y6X4 670 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 GOLGA6CA6NDK9 693 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 GOLGA6DP0CG33 693 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 SPATA1Q5VX52 437 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 WDR93Q6P2C0 686 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 DIS3L2Q8IYB7 885 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 BCAS4Q8TDM0 211 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 GOLGA6AQ9NYA3 693 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 PCDHB6Q9Y5E3 794 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 DIP2BQ9P265 1576 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 RANBP6O60518 1105 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 SARSP49591 514 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 SECISBP2LQ93073 1101 aaKnown RBP21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 INCENPQ9NQS7 918 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 SAMM50Q9Y512 469 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 KDM3BQ7LBC6 1761 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 HEG1Q9ULI3 1381 aa21.24■□□□□ 0.99
CCDC88B-207ENST00000479965 MED1Q15648 1581 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 ADORA1P30542 326 aa21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 APTXQ7Z2E3 356 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 TMTC1Q8IUR5 882 aa21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 CMTR1Q8N1G2 835 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 CDHR2Q9BYE9 1310 aa21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 RNF225M0QZC1 329 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 KRT9P35527 623 aa21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 IL15P40933 162 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 ARHGAP25P42331 645 aa21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 USP14P54578 494 aa21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 NR5A1Q13285 461 aa21.23■□□□□ 0.99
CCDC88B-207ENST00000479965 ERCC5P28715 1186 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 UBN2Q6ZU65 1347 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 COG1Q8WTW3 980 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 CHP1Q99653 195 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 CSRNP2Q9H175 543 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 FBXO2Q9UK22 296 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 GUCY1A2P33402 732 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 TOB1P50616 345 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 SUGP1Q8IWZ8 645 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 ABHD10Q9NUJ1 306 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 ZAP70P43403 619 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 SSRP1Q08945 709 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 SCARF1Q14162 830 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 FAM107BQ9H098 131 aa21.22■□□□□ 0.99
CCDC88B-207ENST00000479965 PTPREP23469 700 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 CYP26C1Q6V0L0 522 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 TBC1D10CQ8IV04 446 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 TRIML1Q8N9V2 468 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 CTAGE1Q96RT6 745 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 TAB2Q9NYJ8 693 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 CEP126Q9P2H0 1117 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 CTNND2Q9UQB3 1225 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 ATP1A1P05023 1023 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 MYBL2P10244 700 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 AARSP49588 968 aaKnown RBP eCLIP21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 IRAK1P51617 712 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 FKBP15Q5T1M5 1219 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 NT5DC1Q5TFE4 455 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 VIPAS39Q9H9C1 493 aa21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 RGPD8O14715 1765 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-207ENST00000479965 H0YHG0 523 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 CPP00450 1065 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 AMPD2Q01433 879 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 TMEM67Q5HYA8 995 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 OSCARQ8IYS5 282 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 ANKRD20A12PQ8NF67 263 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 GOLGA6BA6NDN3 693 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 ACTN4O43707 911 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 HNRNPH1P31943 449 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 MRPS25P82663 173 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 TTC5Q8N0Z6 440 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 EPSTI1Q96J88 318 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 SELENOOQ9BVL4 669 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 SAR1BQ9Y6B6 198 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 SHTN1A0MZ66 631 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 EYA2O00167 538 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 SH2B2O14492 632 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 MAP2K2P36507 400 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 APPBP2Q92624 585 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 NBPF3Q9H094 633 aa21.2■□□□□ 0.98
CCDC88B-207ENST00000479965 INPP5BP32019 993 aa21.19■□□□□ 0.98
CCDC88B-207ENST00000479965 GNGT1P63211 74 aa21.19■□□□□ 0.98
CCDC88B-207ENST00000479965 FOXO4P98177 505 aa21.19■□□□□ 0.98
CCDC88B-207ENST00000479965 KANK3Q6NY19 840 aa21.19■□□□□ 0.98
CCDC88B-207ENST00000479965 CABP5Q9NP86 173 aa21.19■□□□□ 0.98
CCDC88B-207ENST00000479965 PBX1P40424 430 aa21.19■□□□□ 0.98
CCDC88B-207ENST00000479965 CXorf56Q9H5V9 222 aa21.19■□□□□ 0.98
CCDC88B-207ENST00000479965 SLC12A7Q9Y666 1083 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms