RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 CIAO1O76071 339 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 PRKAR2AP13861 404 aaKnown RBP8.2□□□□□ -1.1
VCP-205ENST00000479300 GCLCP48506 637 aaPredicted RBP8.2□□□□□ -1.1
VCP-205ENST00000479300 MECOMQ03112 1051 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 CCL14Q16627 93 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 SH3D19Q5HYK7 790 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 LHX8Q68G74 356 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 PI16Q6UXB8 463 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 ZNF280CQ8ND82 737 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 ARHGAP45Q92619 1136 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 USP6NLQ92738 828 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 FRAT1Q92837 279 aaPredicted RBP8.2□□□□□ -1.1
VCP-205ENST00000479300 UBE2OQ9C0C9 1292 aaKnown RBP8.2□□□□□ -1.1
VCP-205ENST00000479300 DENND2AQ9ULE3 1009 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 MROH7-TTC4A0A0A0MT08 1334 aa8.2□□□□□ -1.1
VCP-205ENST00000479300 SEMA3EO15041 775 aa8.19□□□□□ -1.1
VCP-205ENST00000479300 CYP2B6P20813 491 aa8.19□□□□□ -1.1
VCP-205ENST00000479300 CCND3P30281 292 aaPredicted RBP8.19□□□□□ -1.1
VCP-205ENST00000479300 RARSP54136 660 aaKnown RBP8.19□□□□□ -1.1
VCP-205ENST00000479300 TIMM10P62072 90 aa8.19□□□□□ -1.1
VCP-205ENST00000479300 HNRNPUQ00839 825 aaKnown RBP eCLIP8.19□□□□□ -1.1
VCP-205ENST00000479300 MDM2Q00987 491 aaPredicted RBP8.19□□□□□ -1.1
VCP-205ENST00000479300 CACNB2Q08289 660 aaPredicted RBP8.19□□□□□ -1.1
VCP-205ENST00000479300 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.19□□□□□ -1.1
VCP-205ENST00000479300 P2RX7Q99572 595 aaKnown RBP8.19□□□□□ -1.1
VCP-205ENST00000479300 PORCNQ9H237 461 aa8.19□□□□□ -1.1
VCP-205ENST00000479300 DNAJC18Q9H819 358 aa8.19□□□□□ -1.1
VCP-205ENST00000479300 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.19□□□□□ -1.1
VCP-205ENST00000479300 RBPJLQ9UBG7 517 aa8.19□□□□□ -1.1
VCP-205ENST00000479300 PNMA3Q9UL41 463 aa8.19□□□□□ -1.1
VCP-205ENST00000479300 PDS5AQ29RF7 1337 aaKnown RBP8.19□□□□□ -1.1
VCP-205ENST00000479300 LTBP2Q14767 1821 aa8.19□□□□□ -1.1
VCP-205ENST00000479300 CDH23Q9H251 3354 aa8.18□□□□□ -1.1
VCP-205ENST00000479300 CAP2P40123 477 aa8.18□□□□□ -1.1
VCP-205ENST00000479300 IL15P40933 162 aaPredicted RBP8.18□□□□□ -1.1
VCP-205ENST00000479300 Q3C1V9 767 aa8.18□□□□□ -1.1
VCP-205ENST00000479300 GORABQ5T7V8 394 aa8.18□□□□□ -1.1
VCP-205ENST00000479300 TBC1D9Q6ZT07 1266 aa8.18□□□□□ -1.1
VCP-205ENST00000479300 DZIP1Q86YF9 867 aaKnown RBP8.18□□□□□ -1.1
VCP-205ENST00000479300 FAM161BQ96MY7 647 aa8.18□□□□□ -1.1
VCP-205ENST00000479300 OSBPL5Q9H0X9 879 aaPredicted RBP8.18□□□□□ -1.1
VCP-205ENST00000479300 ABCF2Q9UG63 623 aa8.18□□□□□ -1.1
VCP-205ENST00000479300 AKAP2Q9Y2D5 859 aa8.18□□□□□ -1.1
VCP-205ENST00000479300 USP17L5A8MUK1 530 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 XRCC5P13010 732 aaKnown RBP8.17□□□□□ -1.1
VCP-205ENST00000479300 HERVK_113P62684 666 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 MTMR2Q13614 643 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 MORN1Q5T089 497 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 FAM109BQ6ICB4 259 aaPredicted RBP8.17□□□□□ -1.1
VCP-205ENST00000479300 SLF2Q8IX21 1173 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 ZGPATQ8N5A5 531 aaKnown RBP8.17□□□□□ -1.1
VCP-205ENST00000479300 NSUN4Q96CB9 384 aaKnown RBP8.17□□□□□ -1.1
VCP-205ENST00000479300 WDR18Q9BV38 432 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 COPRSQ9NQ92 184 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 FLRT1Q9NZU1 646 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 HMG20BQ9P0W2 317 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 CDK5RAP2Q96SN8 1893 aa8.17□□□□□ -1.1
VCP-205ENST00000479300 SRGAP3O43295 1099 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 CNMDO75829 334 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 IGHA2P01877 340 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 GNAI2P04899 355 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 HOXA7P31268 230 aaPredicted RBP8.16□□□□□ -1.1
VCP-205ENST00000479300 BACE1P56817 501 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 TFCP2Q12800 502 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 G3BP1Q13283 466 aaKnown RBP eCLIP8.16□□□□□ -1.14e-11■■■■□ 19.4
VCP-205ENST00000479300 OS9Q13438 667 aaPredicted RBP8.16□□□□□ -1.1
VCP-205ENST00000479300 ZKSCAN2Q63HK3 967 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 SPTY2D1Q68D10 685 aaPredicted RBP8.16□□□□□ -1.1
VCP-205ENST00000479300 ATF7IPQ6VMQ6 1270 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 FTSJ3Q8IY81 847 aaKnown RBP8.16□□□□□ -1.1
VCP-205ENST00000479300 SH3RF3Q8TEJ3 882 aaPredicted RBP8.16□□□□□ -1.1
VCP-205ENST00000479300 XAGE2Q96GT9 111 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 MEIS3Q99687 375 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 NUDT12Q9BQG2 462 aa8.16□□□□□ -1.1
VCP-205ENST00000479300 ZBTB47Q9UFB7 747 aaPredicted RBP8.16□□□□□ -1.1
VCP-205ENST00000479300 MUC3AQ02505 3323 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 A0A1B0GUL7 405 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 ZKSCAN1P17029 563 aaPredicted RBP8.15□□□□□ -1.1
VCP-205ENST00000479300 ERVK-9P63128 1117 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 ERVK-24P63145 666 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 IRX3P78415 501 aaPredicted RBP8.15□□□□□ -1.1
VCP-205ENST00000479300 PABPC4Q13310 644 aaKnown RBP eCLIP8.15□□□□□ -1.1
VCP-205ENST00000479300 MVPQ14764 893 aaKnown RBP8.15□□□□□ -1.1
VCP-205ENST00000479300 C9orf50Q5SZB4 431 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 GPR142Q7Z601 462 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 ADGRA1Q86SQ6 560 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 METTL16Q86W50 562 aaKnown RBP8.15□□□□□ -1.1
VCP-205ENST00000479300 TRPV1Q8NER1 839 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 GPRC5AQ8NFJ5 357 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 SOCS4Q8WXH5 440 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 CLUAP1Q96AJ1 413 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 NEUROD6Q96NK8 337 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 CDX2Q99626 313 aaPredicted RBP8.15□□□□□ -1.1
VCP-205ENST00000479300 EMILIN3Q9NT22 766 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 NDUFB9Q9Y6M9 179 aa8.15□□□□□ -1.1
VCP-205ENST00000479300 FOCADQ5VW36 1801 aa8.15□□□□□ -1.11
VCP-205ENST00000479300 RLFQ13129 1914 aa8.14□□□□□ -1.11
VCP-205ENST00000479300 BCAR3O75815 825 aa8.14□□□□□ -1.11
VCP-205ENST00000479300 GDF11O95390 407 aa8.14□□□□□ -1.11
VCP-205ENST00000479300 MS4A1P11836 297 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms