RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	ACSS3	Q9H6R3	686 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	LATS2	Q9NRM7	1088 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	FAM105A	Q9NUU6	356 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	RCAN3	Q9UKA8	241 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	ADAMTS6	Q9UKP5	1117 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	ERBIN	Q96RT1	1412 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	YEATS2	Q9ULM3	1422 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	RERE	Q9P2R6	1566 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	DIP2C	Q9Y2E4	1556 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	METTL12	A8MUP2	240 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	KIF3B	O15066	747 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	RGS3	P49796	1198 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	CYP27A1	Q02318	531 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	C8orf34	Q49A92	452 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	ZSCAN30	Q86W11	494 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	FTSJ3	Q8IY81	847 aa	Known RBP	5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	TSPYL1	Q9H0U9	437 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	UPF2	Q9HAU5	1272 aa	Known RBP	5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	MBNL3	Q9NUK0	354 aa	Known RBP	5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	KANK1	Q14678	1352 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	NAIP	Q13075	1403 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	AGL	P35573	1532 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	ABCA6	Q8N139	1617 aa		5.87	□□□□□ -1.47
PTCD3-212	ENST00000477520	GCC2	Q8IWJ2	1684 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	EIF2AK4	Q9P2K8	1649 aa	Known RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	BRD4	O60885	1362 aa	Predicted RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	EIF3A	Q14152	1382 aa	Known RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	IBTK	Q9P2D0	1353 aa	Predicted RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	RPLP1	P05386	114 aa	Known RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	RNASE1	P07998	156 aa	Known RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	CD8B	P10966	210 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	MSN	P26038	577 aa	Known RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	TMEM164	Q5U3C3	297 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	PEAR1	Q5VY43	1037 aa	Predicted RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	DYM	Q7RTS9	669 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	ATG4D	Q86TL0	474 aa	Predicted RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	CILP2	Q8IUL8	1156 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	KSR1	Q8IVT5	923 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	TEX2	Q8IWB9	1127 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	PMEPA1	Q969W9	287 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	PPP1R9B	Q96SB3	815 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	CCDC94	Q9BW85	323 aa	Predicted RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	GRPEL1	Q9HAV7	217 aa		5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	RC3H2	Q9HBD1	1191 aa	Known RBP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	BCCIP	Q9P287	314 aa	Known RBP eCLIP	5.86	□□□□□ -1.47
PTCD3-212	ENST00000477520	LRPPRC	P42704	1394 aa	Known RBP	5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	MAPK8IP3	Q9UPT6	1336 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	ZNF500	O60304	480 aa	Predicted RBP	5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	ECEL1	O95672	775 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	ZNF865	P0CJ78	1059 aa	Predicted RBP	5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	HSPA5	P11021	654 aa	Known RBP	5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	FUT4	P22083	530 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	MAOB	P27338	520 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	MCM4	P33991	863 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	CD96	P40200	585 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	MESP2	Q0VG99	397 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	PKN1	Q16512	942 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	AKAP4	Q5JQC9	854 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	GGT6	Q6P531	493 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	OGFOD3	Q6PK18	319 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	CREBRF	Q8IUR6	639 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	STK11IP	Q8N1F8	1099 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	PLD6	Q8N2A8	252 aa	Known RBP	5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	LGR6	Q9HBX8	967 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	BCORL1	Q5H9F3	1711 aa		5.85	□□□□□ -1.47
PTCD3-212	ENST00000477520	NINL	Q9Y2I6	1382 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	KDM2B	Q8NHM5	1336 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	SRPK2	P78362	688 aa	Known RBP	5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	HMGN5	P82970	282 aa	Known RBP	5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	RALBP1	Q15311	655 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	ZNF423	Q2M1K9	1284 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	LCE5A	Q5TCM9	118 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	LRRN4CL	Q8ND94	238 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	PNISR	Q8TF01	805 aa	Known RBP	5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	TMEM40	Q8WWA1	233 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	CLP1	Q92989	425 aa	Known RBP	5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	GSX1	Q9H4S2	264 aa	Predicted RBP	5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	CHMP5	Q9NZZ3	219 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	POGK	Q9P215	609 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520		U3KQE9	123 aa		5.84	□□□□□ -1.47
PTCD3-212	ENST00000477520	FAM135A	Q9P2D6	1515 aa		5.84	□□□□□ -1.48
PTCD3-212	ENST00000477520	NUP155	O75694	1391 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	TNFRSF21	O75509	655 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	EDN3	P14138	238 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	CDK11B	P21127	795 aa	Known RBP	5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	MZF1	P28698	734 aa	Predicted RBP	5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	ASPA	P45381	313 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	RBM25	P49756	843 aa	Known RBP	5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	MLEC	Q14165	292 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	FAM181A	Q8N9Y4	354 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	EXOC6	Q8TAG9	804 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	DNAJC2	Q99543	621 aa	Known RBP	5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	ARID3A	Q99856	593 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	FOXD3	Q9UJU5	478 aa	Predicted RBP	5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	AP4E1	Q9UPM8	1137 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	DAGLA	Q9Y4D2	1042 aa		5.83	□□□□□ -1.48
PTCD3-212	ENST00000477520	RNF17	Q9BXT8	1623 aa	Known RBP	5.83	□□□□□ -1.48

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms