RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TTYH1Q9H313 450 aaPredicted RBP14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 GPR108Q9NPR9 543 aa14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 TRIM75PA6NK02 468 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 CTNND1O60716 968 aaKnown RBP14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 CYP2B6P20813 491 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 ADORA1P30542 326 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 SHHQ15465 462 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 LHX8Q68G74 356 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 PROCA1Q8NCQ7 364 aaPredicted RBP14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 XAGE2Q96GT9 111 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 DAGLAQ9Y4D2 1042 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 PDS5AQ29RF7 1337 aaKnown RBP14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 ATRNL1Q5VV63 1379 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 LOC285556D6RIA3 1793 aa14.55□□□□□ -0.08
SQSTM1-206ENST00000466342 RAB11FIP3O75154 756 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 XRCC5P13010 732 aaKnown RBP14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 PRDX5P30044 214 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 HOXD11P31277 338 aaPredicted RBP14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 SMAD3P84022 425 aaKnown RBP14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 CACNB2Q08289 660 aaPredicted RBP14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 TNNI3KQ59H18 835 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 TRMT44Q8IYL2 757 aaKnown RBP14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 RHPN1Q8TCX5 695 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 NEUROD6Q96NK8 337 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 USP40Q9NVE5 1235 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 PRKAG2Q9UGJ0 569 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 FPGT-TNNI3KV9GXZ4 949 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 MYH2Q9UKX2 1941 aa14.54□□□□□ -0.08
SQSTM1-206ENST00000466342 ATAD5Q96QE3 1844 aa14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 TMEM265A0A087WTH1 108 aa14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 PABPC4Q13310 644 aaKnown RBP eCLIP14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 RASGRF1Q13972 1273 aa14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 SPTY2D1Q68D10 685 aaPredicted RBP14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 KIF1BPQ96EK5 621 aa14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 NUDT12Q9BQG2 462 aa14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 SENP6Q9GZR1 1112 aaPredicted RBP14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 DCTPP1Q9H773 170 aa14.53□□□□□ -0.08
SQSTM1-206ENST00000466342 APBB1O00213 710 aa14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 ENTPD3O75355 529 aa14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 CCND3P30281 292 aaPredicted RBP14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 HDAC1Q13547 482 aaPredicted RBP14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 DIXDC1Q155Q3 683 aa14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 GORABQ5T7V8 394 aa14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 SLF2Q8IX21 1173 aa14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 FAM163AQ96GL9 167 aaPredicted RBP14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 MORF4L1Q9UBU8 362 aa14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 RLFQ13129 1914 aa14.52□□□□□ -0.09
SQSTM1-206ENST00000466342 C9orf50Q5SZB4 431 aa14.51□□□□□ -0.09
SQSTM1-206ENST00000466342 CCDC84Q86UT8 332 aaPredicted RBP14.51□□□□□ -0.09
SQSTM1-206ENST00000466342 EAF2Q96CJ1 260 aaPredicted RBP14.51□□□□□ -0.09
SQSTM1-206ENST00000466342 IDI2Q9BXS1 227 aa14.51□□□□□ -0.09
SQSTM1-206ENST00000466342 ASCC2Q9H1I8 757 aaPredicted RBP14.51□□□□□ -0.09
SQSTM1-206ENST00000466342 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.51□□□□□ -0.09
SQSTM1-206ENST00000466342 ABCF2Q9UG63 623 aa14.51□□□□□ -0.09
SQSTM1-206ENST00000466342 RGS3P49796 1198 aa14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 MAP3K12Q12852 859 aa14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 SH3BP5LQ7L8J4 393 aa14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 DZIP1Q86YF9 867 aaKnown RBP14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 ZSCAN29Q8IWY8 852 aaPredicted RBP14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 CLASRPQ8N2M8 674 aaKnown RBP14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 SOCS4Q8WXH5 440 aa14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 LRRCC1Q9C099 1032 aa14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 IL1RAPL2Q9NP60 686 aa14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 MYO5AQ9Y4I1 1855 aaKnown RBP14.5□□□□□ -0.09
SQSTM1-206ENST00000466342 GAKO14976 1311 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 UQCRFS1P1P0C7P4 283 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 SLURP2P0DP57 97 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 ZKSCAN1P17029 563 aaPredicted RBP14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 ARID4AP29374 1257 aaPredicted RBP14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 ATN1P54259 1190 aaPredicted RBP14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 SPP2Q13103 211 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 ERICH6Q7L0X2 663 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 AACSQ86V21 672 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 USP38Q8NB14 1042 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 DBNDD2Q9BQY9 259 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 CCDC8Q9H0W5 538 aaPredicted RBP14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 HMG20BQ9P0W2 317 aa14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 DBNLQ9UJU6 430 aaKnown RBP14.49□□□□□ -0.09
SQSTM1-206ENST00000466342 DDTLA6NHG4 134 aaPredicted RBP14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 LDHCP07864 332 aa14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 RTP1P59025 263 aa14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 CCDC158Q5M9N0 1113 aa14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 SPATA5Q8NB90 893 aa14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 ZNF280CQ8ND82 737 aa14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 ATXN2LQ8WWM7 1075 aaKnown RBP14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 USP6NLQ92738 828 aa14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 TBC1D2Q9BYX2 928 aa14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 RWDD1Q9H446 243 aaPredicted RBP14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 TLR7Q9NYK1 1049 aaKnown RBP14.48□□□□□ -0.09
SQSTM1-206ENST00000466342 TBC1D12O60347 775 aa14.47□□□□□ -0.09
SQSTM1-206ENST00000466342 HMGCS2P54868 508 aa14.47□□□□□ -0.09
SQSTM1-206ENST00000466342 MECOMQ03112 1051 aa14.47□□□□□ -0.09
SQSTM1-206ENST00000466342 CCL14Q16627 93 aa14.47□□□□□ -0.09
SQSTM1-206ENST00000466342 SH3D19Q5HYK7 790 aa14.47□□□□□ -0.09
SQSTM1-206ENST00000466342 NCOR1O75376 2440 aa14.47□□□□□ -0.09
SQSTM1-206ENST00000466342 MROH7-TTC4A0A0A0MT08 1334 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 MYO9BQ13459 2157 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 GPR75-ASB3A0A0A6YYF3 556 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 SMARCA5O60264 1052 aaPredicted RBP14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 IGSF3O75054 1194 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms