RNA–Protein interactions for RNA: ENST00000465756.5

NPHP3-203, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 3,852 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-203ENST00000465756 TRDNQ13061 729 aa12.81□□□□□ -0.36
NPHP3-203ENST00000465756 DCP1AQ9NPI6 582 aaPredicted RBP12.81□□□□□ -0.36
NPHP3-203ENST00000465756 GPR25O00155 361 aa12.81□□□□□ -0.36
NPHP3-203ENST00000465756 PTPRAP18433 802 aa12.81□□□□□ -0.36
NPHP3-203ENST00000465756 ZMYM1Q5SVZ6 1142 aa12.81□□□□□ -0.36
NPHP3-203ENST00000465756 LCORLQ8N3X6 602 aa12.81□□□□□ -0.36
NPHP3-203ENST00000465756 RIOK1Q9BRS2 568 aaKnown RBP12.81□□□□□ -0.36
NPHP3-203ENST00000465756 KANSL2Q9H9L4 492 aa12.81□□□□□ -0.36
NPHP3-203ENST00000465756 DDX4Q9NQI0 724 aaKnown RBP12.81□□□□□ -0.36
NPHP3-203ENST00000465756 PNMA2Q9UL42 364 aa12.81□□□□□ -0.36
NPHP3-203ENST00000465756 ZBTB21Q9ULJ3 1066 aa12.81□□□□□ -0.36
NPHP3-203ENST00000465756 ISY1Q9ULR0 285 aaKnown RBP12.81□□□□□ -0.36
NPHP3-203ENST00000465756 SP3Q02447 781 aa12.8□□□□□ -0.36
NPHP3-203ENST00000465756 AKAP11Q9UKA4 1901 aa12.8□□□□□ -0.36
NPHP3-203ENST00000465756 COPB2P35606 906 aa12.8□□□□□ -0.36
NPHP3-203ENST00000465756 RAB3GAP1Q15042 981 aa12.8□□□□□ -0.36
NPHP3-203ENST00000465756 CAPN2P17655 700 aa12.8□□□□□ -0.36
NPHP3-203ENST00000465756 TRIM75PA6NK02 468 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L12C9JPN9 530 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L21D6R901 530 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 FCGRTP55899 365 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 SPP2Q13103 211 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 EFCC1Q9HA90 598 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 DOCK2Q92608 1830 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 ATP2B2Q01814 1243 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 DGKZQ13574 1117 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 COA7Q96BR5 231 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 STRBPQ96SI9 672 aaKnown RBP12.79□□□□□ -0.36
NPHP3-203ENST00000465756 SLC5A4Q9NY91 659 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 AGTPBP1Q9UPW5 1226 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 DLK2Q6UY11 383 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 NBPF11Q86T75 865 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 LPAR1Q92633 364 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 NDUFB9Q9Y6M9 179 aa12.79□□□□□ -0.36
NPHP3-203ENST00000465756 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.79□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L15C9J2P7 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L13C9JLJ4 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L11C9JVI0 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L18D6R9N7 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L22D6RA61 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L17D6RBQ6 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L19D6RCP7 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L20D6RJB6 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 USP17L24Q0WX57 530 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 ICA1Q05084 483 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 IMMTQ16891 758 aaKnown RBP12.78□□□□□ -0.36
NPHP3-203ENST00000465756 PI4K2BQ8TCG2 481 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 CCDC171Q6TFL3 1326 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 PDHXO00330 501 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 IRF6O14896 467 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 GH2P01242 217 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 C12orf60Q5U649 245 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 SYNPO2Q9UMS6 1093 aa12.78□□□□□ -0.36
NPHP3-203ENST00000465756 TCRBV5S4A2TA0A5A2 114 aa12.77□□□□□ -0.36
NPHP3-203ENST00000465756 TSPY3P0CV98 308 aa12.77□□□□□ -0.36
NPHP3-203ENST00000465756 TSPY8P0CW00 308 aa12.77□□□□□ -0.36
NPHP3-203ENST00000465756 SDR42E1Q8WUS8 393 aa12.77□□□□□ -0.36
NPHP3-203ENST00000465756 EDC3Q96F86 508 aaKnown RBP12.77□□□□□ -0.36
NPHP3-203ENST00000465756 TSHZ2Q9NRE2 1034 aa12.77□□□□□ -0.36
NPHP3-203ENST00000465756 PPP4R2Q9NY27 417 aa12.77□□□□□ -0.36
NPHP3-203ENST00000465756 ZNF646O15015 1829 aaPredicted RBP12.77□□□□□ -0.36
NPHP3-203ENST00000465756 A0A0G2JLL6 359 aaPredicted RBP12.77□□□□□ -0.37
NPHP3-203ENST00000465756 BACE1P56817 501 aa12.77□□□□□ -0.37
NPHP3-203ENST00000465756 ALX1Q15699 326 aa12.77□□□□□ -0.37
NPHP3-203ENST00000465756 PRRT2Q7Z6L0 340 aaPredicted RBP12.77□□□□□ -0.37
NPHP3-203ENST00000465756 METTL16Q86W50 562 aaKnown RBP12.77□□□□□ -0.37
NPHP3-203ENST00000465756 IVNS1ABPQ9Y6Y0 642 aa12.77□□□□□ -0.37
NPHP3-203ENST00000465756 THSD7BQ9C0I4 1608 aa12.77□□□□□ -0.37
NPHP3-203ENST00000465756 FMNL1O95466 1100 aaPredicted RBP12.77□□□□□ -0.37
NPHP3-203ENST00000465756 SART3Q15020 963 aaKnown RBP12.77□□□□□ -0.37
NPHP3-203ENST00000465756 RNF20Q5VTR2 975 aa12.77□□□□□ -0.37
NPHP3-203ENST00000465756 PLEKHM2Q8IWE5 1019 aa12.77□□□□□ -0.37
NPHP3-203ENST00000465756 BRI3BPQ8WY22 251 aa12.77□□□□□ -0.37
NPHP3-203ENST00000465756 CNNM2Q9H8M5 875 aa12.77□□□□□ -0.37
NPHP3-203ENST00000465756 FDX1P10109 184 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 IFNL3Q8IZI9 196 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 ERICH2A1L162 156 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 TSPY2A6NKD2 308 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 RAD21O60216 631 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 CDK8P49336 464 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 TTC22Q5TAA0 569 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 C16orf86Q6ZW13 317 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 ZFPM1Q8IX07 1006 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 TRMT44Q8IYL2 757 aaKnown RBP12.76□□□□□ -0.37
NPHP3-203ENST00000465756 MB21D1Q8N884 522 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 HOXC10Q9NYD6 342 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 GDF11O95390 407 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 TBC1D8O95759 1140 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 SDSP20132 328 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 UBXN2AP68543 259 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 SH3D19Q5HYK7 790 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 IQCA1Q86XH1 822 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 KIAA1683Q9H0B3 1180 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 AFG3L2Q9Y4W6 797 aa12.76□□□□□ -0.37
NPHP3-203ENST00000465756 U3KPZ7 1027 aaPredicted RBP12.76□□□□□ -0.37
NPHP3-203ENST00000465756 SSC5DA1L4H1 1573 aa12.75□□□□□ -0.37
NPHP3-203ENST00000465756 BTBD19C9JJ37 291 aa12.75□□□□□ -0.37
NPHP3-203ENST00000465756 TLR2O60603 784 aa12.75□□□□□ -0.37
NPHP3-203ENST00000465756 TRAF1Q13077 416 aa12.75□□□□□ -0.37
NPHP3-203ENST00000465756 FBXO46Q6PJ61 603 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms