RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 PPATQ06203 517 aa14□□□□□ -0.17
USP54-209ENST00000464635 NOL9Q5SY16 702 aaKnown RBP14□□□□□ -0.17
USP54-209ENST00000464635 NSUN4Q96CB9 384 aaKnown RBP14□□□□□ -0.17
USP54-209ENST00000464635 ANTXR1Q9H6X2 564 aa14□□□□□ -0.17
USP54-209ENST00000464635 ZFYVE28Q9HCC9 887 aa14□□□□□ -0.17
USP54-209ENST00000464635 ZSWIM6Q9HCJ5 1215 aa14□□□□□ -0.17
USP54-209ENST00000464635 RBM8AQ9Y5S9 174 aaKnown RBP14□□□□□ -0.17
USP54-209ENST00000464635 GPR75-ASB3A0A0A6YYF3 556 aa13.99□□□□□ -0.17
USP54-209ENST00000464635 PHF20L1A8MW92 1017 aa13.99□□□□□ -0.17
USP54-209ENST00000464635 HMGB1P09429 215 aaKnown RBP13.99□□□□□ -0.17
USP54-209ENST00000464635 MOGSQ13724 837 aa13.99□□□□□ -0.17
USP54-209ENST00000464635 ALX1Q15699 326 aa13.99□□□□□ -0.17
USP54-209ENST00000464635 CREB3L3Q68CJ9 461 aa13.99□□□□□ -0.17
USP54-209ENST00000464635 SLF2Q8IX21 1173 aa13.99□□□□□ -0.17
USP54-209ENST00000464635 INTS4Q96HW7 963 aaKnown RBP13.99□□□□□ -0.17
USP54-209ENST00000464635 CWC22Q9HCG8 908 aaKnown RBP13.99□□□□□ -0.17
USP54-209ENST00000464635 RAI14Q9P0K7 980 aa13.99□□□□□ -0.17
USP54-209ENST00000464635 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.99□□□□□ -0.17
USP54-209ENST00000464635 KCNH4Q9UQ05 1017 aa13.99□□□□□ -0.17
USP54-209ENST00000464635 PDE4DIPQ5VU43 2346 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 FAM196BA6NMK8 535 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 HSPD1P10809 573 aaKnown RBP13.98□□□□□ -0.17
USP54-209ENST00000464635 GNAT2P19087 354 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 NEK4P51957 841 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 VPS53Q5VIR6 699 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 ZNF589Q86UQ0 364 aaPredicted RBP13.98□□□□□ -0.17
USP54-209ENST00000464635 ZSCAN29Q8IWY8 852 aaPredicted RBP13.98□□□□□ -0.17
USP54-209ENST00000464635 FBXL16Q8N461 479 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 ARHGAP39Q9C0H5 1083 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 EFCC1Q9HA90 598 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 PTPN22Q9Y2R2 807 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 CENPFP49454 3210 aa13.98□□□□□ -0.17
USP54-209ENST00000464635 ADGRA2Q96PE1 1338 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 LOC285556D6RIA3 1793 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 TCRBV5S4A2TA0A5A2 114 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 SLC27A2O14975 620 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 ECM2O94769 699 aaPredicted RBP13.97□□□□□ -0.17
USP54-209ENST00000464635 PDIA4P13667 645 aaKnown RBP13.97□□□□□ -0.17
USP54-209ENST00000464635 DDIT3P35638 169 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 ANKRD1Q15327 319 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 SLC9C2Q5TAH2 1124 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 CCDC84Q86UT8 332 aaPredicted RBP13.97□□□□□ -0.17
USP54-209ENST00000464635 SCYL3Q8IZE3 742 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 OSBP2Q969R2 916 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 TTC14Q96N46 770 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 ZCCHC17Q9NP64 241 aaKnown RBP13.97□□□□□ -0.17
USP54-209ENST00000464635 PALD1Q9ULE6 856 aa13.97□□□□□ -0.17
USP54-209ENST00000464635 COL2A1P02458 1487 aaPredicted RBP13.97□□□□□ -0.17
USP54-209ENST00000464635 MYH1P12882 1939 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 TLR2O60603 784 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 GSTO1P78417 241 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 MAP3K10Q02779 954 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 CUL4AQ13619 759 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 RUFY3Q7L099 469 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 ADGRA1Q86SQ6 560 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 CERS3Q8IU89 383 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 RASEFQ8IZ41 740 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 SH3RF3Q8TEJ3 882 aaPredicted RBP13.96□□□□□ -0.17
USP54-209ENST00000464635 ZSCAN31Q96LW9 406 aaPredicted RBP13.96□□□□□ -0.17
USP54-209ENST00000464635 LRP2BPQ9P2M1 347 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 CYP46A1Q9Y6A2 500 aa13.96□□□□□ -0.17
USP54-209ENST00000464635 POTEFA5A3E0 1075 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 PDHXO00330 501 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 LDHCP07864 332 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 PDE6AP16499 860 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 PTPRAP18433 802 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 NT5C2P49902 561 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 GPAT2Q6NUI2 795 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 ANKRD23Q86SG2 305 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 TEX11Q8IYF3 940 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 CHMP4CQ96CF2 233 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 OSBPL5Q9H0X9 879 aaPredicted RBP13.95□□□□□ -0.18
USP54-209ENST00000464635 PIH1D3Q9NQM4 214 aaKnown RBP13.95□□□□□ -0.18
USP54-209ENST00000464635 CHMP5Q9NZZ3 219 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 CPA4Q9UI42 421 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 PTCH2Q9Y6C5 1203 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 NDUFB9Q9Y6M9 179 aa13.95□□□□□ -0.18
USP54-209ENST00000464635 KIAA0100Q14667 2235 aaKnown RBP13.94□□□□□ -0.18
USP54-209ENST00000464635 NPM3O75607 178 aaKnown RBP13.94□□□□□ -0.18
USP54-209ENST00000464635 CTGFP29279 349 aa13.94□□□□□ -0.18
USP54-209ENST00000464635 LACTBP83111 547 aaPredicted RBP13.94□□□□□ -0.18
USP54-209ENST00000464635 RRP1BQ14684 758 aaKnown RBP13.94□□□□□ -0.18
USP54-209ENST00000464635 DDX60LQ5H9U9 1706 aaKnown RBP13.94□□□□□ -0.18
USP54-209ENST00000464635 NAA16Q6N069 864 aaPredicted RBP13.94□□□□□ -0.18
USP54-209ENST00000464635 C17orf99Q6UX52 265 aa13.94□□□□□ -0.18
USP54-209ENST00000464635 SEC62Q99442 399 aaKnown RBP13.94□□□□□ -0.18
USP54-209ENST00000464635 PICK1Q9NRD5 415 aa13.94□□□□□ -0.18
USP54-209ENST00000464635 SH2B1Q9NRF2 756 aaPredicted RBP13.94□□□□□ -0.18
USP54-209ENST00000464635 AATFQ9NY61 560 aaKnown RBP eCLIP13.94□□□□□ -0.18
USP54-209ENST00000464635 ZHX2Q9Y6X8 837 aa13.94□□□□□ -0.18
USP54-209ENST00000464635 WDR19Q8NEZ3 1342 aa13.93□□□□□ -0.18
USP54-209ENST00000464635 NAV1Q8NEY1 1877 aa13.93□□□□□ -0.18
USP54-209ENST00000464635 A0A0G2JLL6 359 aaPredicted RBP13.93□□□□□ -0.18
USP54-209ENST00000464635 PATL2C9JE40 543 aaKnown RBP13.93□□□□□ -0.18
USP54-209ENST00000464635 CXCL11O14625 94 aa13.93□□□□□ -0.18
USP54-209ENST00000464635 GPAA1O43292 621 aa13.93□□□□□ -0.18
USP54-209ENST00000464635 IDH1O75874 414 aaKnown RBP13.93□□□□□ -0.18
USP54-209ENST00000464635 CD2BP2O95400 341 aaKnown RBP13.93□□□□□ -0.18
USP54-209ENST00000464635 GIMAP6Q6P9H5 292 aa13.93□□□□□ -0.18
USP54-209ENST00000464635 PRRT2Q7Z6L0 340 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms