RNA–Protein interactions for RNA: ENST00000439732.6

SMARCA2-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 3

Gene SMARCA2, Length 755 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-213	ENST00000439732	ABCB5	Q2M3G0	1257 aa		11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	CCDC129	Q6ZRS4	1044 aa		11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	C16orf86	Q6ZW13	317 aa		11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	FASTKD5	Q7L8L6	764 aa	Known RBP	11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	WDR18	Q9BV38	432 aa		11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	DNAJC18	Q9H819	358 aa		11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	MKNK2	Q9HBH9	465 aa		11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	KCNH4	Q9UQ05	1017 aa		11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	RAD50	Q92878	1312 aa		11.35	□□□□□ -0.59
SMARCA2-213	ENST00000439732	OTOF	Q9HC10	1997 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	CCL15-CCL14	A0A0B4J2E2	113 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	FGA	P02671	866 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	SLURP2	P0DP57	97 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	SHMT1	P34896	483 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	GJA5	P36382	358 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	CDK8	P49336	464 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	CCL15	Q16663	113 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	CASC1	Q6TDU7	716 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	ZNF280C	Q8ND82	737 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	CNKSR2	Q8WXI2	1034 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	DYNLL2	Q96FJ2	89 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	MS4A4A	Q96JQ5	239 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	SAGE1	Q9NXZ1	904 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	CTNNA3	Q9UI47	895 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	ZBTB21	Q9ULJ3	1066 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	AFG3L2	Q9Y4W6	797 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	ZMYM6	O95789	1325 aa		11.34	□□□□□ -0.59
SMARCA2-213	ENST00000439732	CYP2D7	A0A087X1C5	515 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	C19orf81	C9J6K1	198 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	MPHOSPH10	O00566	681 aa	Known RBP	11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	GDF11	O95390	407 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	GH2	P01242	217 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	CTCF	P49711	727 aa	Predicted RBP	11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	RRP1B	Q14684	758 aa	Known RBP	11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	TMEM179	Q6ZVK1	233 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	IFNL1	Q8IU54	200 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	DSCC1	Q9BVC3	393 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ZCCHC17	Q9NP64	241 aa	Known RBP	11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ANAPC4	Q9UJX5	808 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	DOCK1	Q14185	1865 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	MYH8	P13535	1937 aa		11.33	□□□□□ -0.6
SMARCA2-213	ENST00000439732	SIPA1L1	O43166	1804 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	TRPA1	O75762	1119 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	HSPA1A	P0DMV8	641 aa	Known RBP	11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	HSPA1B	P0DMV9	641 aa	Known RBP	11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	PPARA	Q07869	468 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	SPP2	Q13103	211 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	RAB3GAP1	Q15042	981 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	VPS53	Q5VIR6	699 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	KIAA1211	Q6ZU35	1233 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	BRI3BP	Q8WY22	251 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	RNF186	Q9NXI6	227 aa		11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	DDX60L	Q5H9U9	1706 aa	Known RBP	11.32	□□□□□ -0.6
SMARCA2-213	ENST00000439732	THSD7B	Q9C0I4	1608 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ROBO3	Q96MS0	1386 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ATAD5	Q96QE3	1844 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732		A0A0G2JLL6	359 aa	Predicted RBP	11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	TRIM75P	A6NK02	468 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	USP17L10	C9JJH3	530 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ZNF213	O14771	459 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	FOXP2	O15409	715 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	PC	P11498	1178 aa	Known RBP	11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	NT5C2	P49902	561 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	USP14	P54578	494 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	BACE1	P56817	501 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	PABPC4	Q13310	644 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	PPP4R3B	Q5MIZ7	849 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	PRRT2	Q7Z6L0	340 aa	Predicted RBP	11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ANKRD23	Q86SG2	305 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	SLC44A5	Q8NCS7	719 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	RNF41	Q9H4P4	317 aa	Predicted RBP	11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	SH2D4A	Q9H788	454 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	KANSL2	Q9H9L4	492 aa		11.31	□□□□□ -0.6
SMARCA2-213	ENST00000439732	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	SGSM2	O43147	1006 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	CDC45	O75419	566 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	JAG1	P78504	1218 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	EVX2	Q03828	476 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	SEPT2	Q15019	361 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	IMMT	Q16891	758 aa	Known RBP	11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	SH3D19	Q5HYK7	790 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	USP17L2	Q6R6M4	530 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	GADL1	Q6ZQY3	521 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	PTPN18	Q99952	460 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	CFHR5	Q9BXR6	569 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ZFYVE28	Q9HCC9	887 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ARHGEF10L	Q9HCE6	1279 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	TMOD4	Q9NZQ9	345 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	SLC45A1	Q9Y2W3	748 aa		11.3	□□□□□ -0.6
SMARCA2-213	ENST00000439732	BTBD19	C9JJ37	291 aa		11.29	□□□□□ -0.6
SMARCA2-213	ENST00000439732	FOXN1	O15353	648 aa		11.29	□□□□□ -0.6
SMARCA2-213	ENST00000439732	ORC4	O43929	436 aa		11.29	□□□□□ -0.6
SMARCA2-213	ENST00000439732	TSPY3	P0CV98	308 aa		11.29	□□□□□ -0.6
SMARCA2-213	ENST00000439732	TSPY8	P0CW00	308 aa		11.29	□□□□□ -0.6
SMARCA2-213	ENST00000439732	AKR1B1	P15121	316 aa		11.29	□□□□□ -0.6
SMARCA2-213	ENST00000439732	RASA1	P20936	1047 aa		11.29	□□□□□ -0.6

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