RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ODF2LQ9ULJ1 636 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 ZBED4O75132 1171 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 DAPK3O43293 454 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 SLC8A3P57103 927 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 CCDC117Q8IWD4 279 aaPredicted RBP19.15■□□□□ 0.66
PTPRF-209ENST00000438120 NEURL1BA8MQ27 555 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 EXOC3O60645 756 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 APBA3O96018 575 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 SNX16P57768 344 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 POSTNQ15063 836 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 CCDC14Q49A88 953 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 KRT25Q7Z3Z0 450 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 TRIM7Q9C029 511 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 BABAM1Q9NWV8 329 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 NFE2L3Q9Y4A8 694 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 EBAG9O00559 213 aa19.14■□□□□ 0.66
PTPRF-209ENST00000438120 VWA3BQ502W6 1294 aa19.14■□□□□ 0.66
PTPRF-209ENST00000438120 C8orf74Q6P047 294 aa19.14■□□□□ 0.66
PTPRF-209ENST00000438120 FAM76AQ8TAV0 307 aa19.14■□□□□ 0.66
PTPRF-209ENST00000438120 NELFBQ8WX92 580 aa19.14■□□□□ 0.66
PTPRF-209ENST00000438120 PLEKHA4Q9H4M7 779 aa19.14■□□□□ 0.66
PTPRF-209ENST00000438120 EXOC7Q9UPT5 735 aa19.14■□□□□ 0.66
PTPRF-209ENST00000438120 USP40Q9NVE5 1235 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 PPP1R2P41236 205 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 PPARAQ07869 468 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 LRMPQ12912 555 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 PNOCQ13519 176 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 GEN1Q17RS7 908 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 SAMD15Q9P1V8 674 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 CTTNBP2NLQ9P2B4 639 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 KIAA1524Q8TCG1 905 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 GYG1P46976 350 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 HDXQ7Z353 690 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 TPH2Q8IWU9 490 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 RABEP2Q9H5N1 569 aa19.14■□□□□ 0.65
PTPRF-209ENST00000438120 HGSO14964 777 aaPredicted RBP19.13■□□□□ 0.65
PTPRF-209ENST00000438120 VIMP08670 466 aaKnown RBP19.13■□□□□ 0.65
PTPRF-209ENST00000438120 NLRP12P59046 1061 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 AZI2Q9H6S1 392 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 USP21Q9UK80 565 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 FRMPD2Q68DX3 1309 aaPredicted RBP19.13■□□□□ 0.65
PTPRF-209ENST00000438120 SMC1BQ8NDV3 1235 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 AOX1Q06278 1338 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 IBTKQ9P2D0 1353 aaPredicted RBP19.13■□□□□ 0.65
PTPRF-209ENST00000438120 LIN9Q5TKA1 542 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 KLHL7Q8IXQ5 586 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 PPIP5K2O43314 1243 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 SDR42E1Q8WUS8 393 aa19.13■□□□□ 0.65
PTPRF-209ENST00000438120 TTF2Q9UNY4 1162 aaKnown RBP19.13■□□□□ 0.65
PTPRF-209ENST00000438120 COL17A1Q9UMD9 1497 aaPredicted RBP19.13■□□□□ 0.65
PTPRF-209ENST00000438120 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.12■□□□□ 0.65
PTPRF-209ENST00000438120 ZNF75DP51815 510 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 MTX1Q13505 466 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 PPANQ9NQ55 473 aaKnown RBP19.12■□□□□ 0.65
PTPRF-209ENST00000438120 USP17L12C9JPN9 530 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 USP17L21D6R901 530 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 TRIM14Q14142 442 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 SECISBP2LQ93073 1101 aaKnown RBP19.12■□□□□ 0.65
PTPRF-209ENST00000438120 CARD6Q9BX69 1037 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 SH3BP5O60239 455 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 DLGAP5Q15398 846 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 ARHGAP44Q17R89 818 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 MFSD14BQ5SR56 506 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 CD19P15391 556 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 CTSWP56202 376 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 ME3Q16798 604 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 ZNF365Q70YC5 407 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 MYO1AQ9UBC5 1043 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 GAS8O95995 478 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 SPATA24Q86W54 205 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 MLKLQ8NB16 471 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 NKIRAS1Q9NYS0 192 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 SERTAD1Q9UHV2 236 aa19.12■□□□□ 0.65
PTPRF-209ENST00000438120 SMCO2A6NFE2 343 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 TTLL7Q6ZT98 887 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 FMNL3Q8IVF7 1028 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 NOX5Q96PH1 765 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 HAUS7Q99871 368 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 CEP104O60308 925 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 SCNN1DP51172 638 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 SF3A3Q12874 501 aaKnown RBP eCLIP19.11■□□□□ 0.651e-6■■■□□ 18.5
PTPRF-209ENST00000438120 EAPPQ56P03 285 aaPredicted RBP19.11■□□□□ 0.65
PTPRF-209ENST00000438120 BRDTQ58F21 947 aaPredicted RBP19.11■□□□□ 0.65
PTPRF-209ENST00000438120 GPR161Q8N6U8 529 aaKnown RBP19.11■□□□□ 0.65
PTPRF-209ENST00000438120 FAM207AQ9NSI2 230 aaPredicted RBP19.11■□□□□ 0.65
PTPRF-209ENST00000438120 BCAMP50895 628 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 RPS8P62241 208 aaKnown RBP19.11■□□□□ 0.65
PTPRF-209ENST00000438120 SLC9C1Q4G0N8 1177 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 SLF1Q9BQI6 1058 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 TCIRG1Q13488 830 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 SETDB1Q15047 1291 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 NIM1KQ8IY84 436 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 ARFGAP2Q8N6H7 521 aa19.11■□□□□ 0.65
PTPRF-209ENST00000438120 REXO1Q8N1G1 1221 aaKnown RBP19.1■□□□□ 0.65
PTPRF-209ENST00000438120 NLRC4Q9NPP4 1024 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.1■□□□□ 0.652e-7■■■■■ 29.5
PTPRF-209ENST00000438120 UTP11Q9Y3A2 253 aaKnown RBP19.1■□□□□ 0.65
PTPRF-209ENST00000438120 GOLGA8HP0CJ92 632 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 DOK7Q18PE1 504 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 HS1BP3Q53T59 392 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms