RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 HS1BP3Q53T59 392 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 HDXQ7Z353 690 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 MIGA1Q8NAN2 632 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 EMILIN1Q9Y6C2 1016 aa7.6□□□□□ -1.19
SCN1A-204ENST00000423058 TRIM27P14373 513 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 MYCT1Q8N699 235 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 AOPEPQ8N6M6 819 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 IQCDQ96DY2 449 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 RNF216Q9NWF9 866 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-204ENST00000423058 DNAI1Q9UI46 699 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 AKR1B15C9JRZ8 316 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-204ENST00000423058 DEXIO95424 95 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 TNNC2P02585 160 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 ZNF853P0CG23 659 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 SH3BGRP55822 239 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-204ENST00000423058 ARHGAP4P98171 946 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 C1orf228Q6PIY5 440 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 CHURC1Q8WUH1 139 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 ARHGAP45Q92619 1136 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 GLG1Q92896 1179 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 VWA3AA6NCI4 1184 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 IRX5P78411 483 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-204ENST00000423058 EXOC8Q8IYI6 725 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 GOLGA5Q8TBA6 731 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 TMEM87BQ96K49 555 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 RAPGEF6Q8TEU7 1601 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 WDR97A6NE52 1622 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 FLOT1O75955 427 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 DLGAP5Q15398 846 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 SLC9C1Q4G0N8 1177 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 C4orf50Q6ZRC1 276 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 SULF1Q8IWU6 871 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 LARP6Q9BRS8 491 aaKnown RBP7.59□□□□□ -1.19
SCN1A-204ENST00000423058 BRPF3Q9ULD4 1205 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 CYP26C1Q6V0L0 522 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 LMNTD2Q8IXW0 634 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 MLXIPQ9HAP2 919 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 SLC12A6Q9UHW9 1150 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 TSKSQ9UJT2 592 aa7.59□□□□□ -1.19
SCN1A-204ENST00000423058 GSTA1P08263 222 aa7.59□□□□□ -1.2
SCN1A-204ENST00000423058 GSTA2P09210 222 aa7.59□□□□□ -1.2
SCN1A-204ENST00000423058 HSPA8P11142 646 aaKnown RBP7.59□□□□□ -1.2
SCN1A-204ENST00000423058 ABCD1P33897 745 aa7.59□□□□□ -1.2
SCN1A-204ENST00000423058 ITKQ08881 620 aa7.59□□□□□ -1.2
SCN1A-204ENST00000423058 CCDC122Q5T0U0 273 aa7.59□□□□□ -1.2
SCN1A-204ENST00000423058 NBPF11Q86T75 865 aa7.59□□□□□ -1.2
SCN1A-204ENST00000423058 DEPTORQ8TB45 409 aa7.59□□□□□ -1.2
SCN1A-204ENST00000423058 CLSTN2Q9H4D0 955 aa7.59□□□□□ -1.2
SCN1A-204ENST00000423058 TNNI1P19237 187 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 RBBP5Q15291 538 aaKnown RBP7.58□□□□□ -1.2
SCN1A-204ENST00000423058 MBIPQ9NS73 344 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 LRFN2Q9ULH4 789 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 RABGAP1Q9Y3P9 1069 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 PPME1Q9Y570 386 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 NOS1P29475 1434 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 ATP8B3O60423 1300 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 SRGAP2BP0DMP2 458 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 PSMD6Q15008 389 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 DHX32Q7L7V1 743 aaKnown RBP7.58□□□□□ -1.2
SCN1A-204ENST00000423058 C19orf44Q9H6X5 657 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 CTNND2Q9UQB3 1225 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 MAP3K5Q99683 1374 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 ADCY7P51828 1080 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 HHATQ5VTY9 493 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 RINT1Q6NUQ1 792 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 SLC17A8Q8NDX2 589 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 YTHDC2Q9H6S0 1430 aaKnown RBP7.58□□□□□ -1.2
SCN1A-204ENST00000423058 CCNA1P78396 465 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 PDE4DQ08499 809 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 TSNAXIP1Q2TAA8 658 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 TMTC4Q5T4D3 741 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 RUFY4Q6ZNE9 571 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 GADL1Q6ZQY3 521 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 PARD3BQ8TEW8 1205 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 ARHGEF2Q92974 986 aaKnown RBP7.58□□□□□ -1.2
SCN1A-204ENST00000423058 ZNF233A6NK53 670 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 STAM2O75886 525 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 ZNF131P52739 623 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 NAA25Q14CX7 972 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 NCAPH2Q6IBW4 605 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 CEP57Q86XR8 500 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 NT5C3AQ9H0P0 336 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 RSPH14Q9UHP6 348 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 ERCC3P19447 782 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 HADHQ16836 314 aaKnown RBP7.58□□□□□ -1.2
SCN1A-204ENST00000423058 NFATC2IPQ8NCF5 419 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 ASIC3Q9UHC3 531 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 N4BP1O75113 896 aaKnown RBP7.58□□□□□ -1.2
SCN1A-204ENST00000423058 TBC1D8O95759 1140 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 CAPN2P17655 700 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 MAN1A1P33908 653 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 GTF2A1P52655 376 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-204ENST00000423058 PPP2R5EQ16537 467 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 FAM160B1Q5W0V3 765 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 GIMAP6Q6P9H5 292 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 RILPQ96NA2 401 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 WWC3Q9ULE0 1092 aa7.58□□□□□ -1.2
SCN1A-204ENST00000423058 DMP1Q13316 513 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 KRT26Q7Z3Y9 468 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 NOP9Q86U38 636 aaKnown RBP7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms