RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 GSCP56915 257 aaPredicted RBP12.13□□□□□ -0.47
USP54-204ENST00000422491 TRDNQ13061 729 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 COG1Q8WTW3 980 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 RIN2Q8WYP3 895 aaPredicted RBP12.13□□□□□ -0.47
USP54-204ENST00000422491 NBPF3Q9H094 633 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 UBN2Q6ZU65 1347 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 ZNF213O14771 459 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 IL15P40933 162 aaPredicted RBP12.13□□□□□ -0.47
USP54-204ENST00000422491 CUL4BQ13620 913 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 CT47A1Q5JQC4 288 aaPredicted RBP12.13□□□□□ -0.47
USP54-204ENST00000422491 APOA5Q6Q788 366 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 TRAPPC11Q7Z392 1133 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 TMTC1Q8IUR5 882 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 TBX22Q9Y458 520 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 UBE2Q2LH0YL09 131 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 SH2B2O14492 632 aaPredicted RBP12.13□□□□□ -0.47
USP54-204ENST00000422491 CD44P16070 742 aaKnown RBP12.13□□□□□ -0.47
USP54-204ENST00000422491 NOSTRINQ8IVI9 506 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 SMARCC1Q92922 1105 aaPredicted RBP12.13□□□□□ -0.47
USP54-204ENST00000422491 CTAGE1Q96RT6 745 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 TAOK2Q9UL54 1235 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 MYH8P13535 1937 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 WDR17Q8IZU2 1322 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 SYNRGQ9UMZ2 1314 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 MYO5AQ9Y4I1 1855 aaKnown RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 AGPSO00116 658 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 ERLIN2O94905 339 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 AKAP17AQ02040 695 aaKnown RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 TRIM29Q14134 588 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 WASHC4Q2M389 1173 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 MAP9Q49MG5 647 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 CYB5R4Q7L1T6 521 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 ZNF579Q8NAF0 562 aaKnown RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 PUS7LQ9H0K6 701 aaKnown RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 SENP2Q9HC62 589 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 FAM217BQ9NTX9 383 aaPredicted RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 ABHD10Q9NUJ1 306 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 MST1RQ04912 1400 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 SEMA3EO15041 775 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 ZFYP08048 801 aaPredicted RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 MCM3P25205 808 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 GGCXP38435 758 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 IARSP41252 1262 aaKnown RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 PIP4K2AP48426 406 aaPredicted RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 FKBP4Q02790 459 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP54-204ENST00000422491 STIM1Q13586 685 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 LRRC24Q50LG9 513 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 KANK3Q6NY19 840 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 CPLX2Q6PUV4 134 aaKnown RBP12.12□□□□□ -0.47
USP54-204ENST00000422491 CCDC91Q7Z6B0 441 aa12.12□□□□□ -0.47
USP54-204ENST00000422491 TARSL2A2RTX5 802 aaKnown RBP12.11□□□□□ -0.47
USP54-204ENST00000422491 PSEN1P49768 467 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 APPBP2Q92624 585 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 KAT14Q9H8E8 782 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 CAMTA1Q9Y6Y1 1673 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 RNF225M0QZC1 329 aaPredicted RBP12.11□□□□□ -0.47
USP54-204ENST00000422491 PSMD14O00487 310 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 CCT5P48643 541 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 IRAK1P51617 712 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 STX17P56962 302 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 HSP90AB3PQ58FF7 597 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 KCNV1Q6PIU1 500 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 CYP26C1Q6V0L0 522 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.11□□□□□ -0.47
USP54-204ENST00000422491 USP49Q70CQ1 688 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 MICU3Q86XE3 530 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 RNF216Q9NWF9 866 aaPredicted RBP12.11□□□□□ -0.47
USP54-204ENST00000422491 BCL9LQ86UU0 1499 aa12.11□□□□□ -0.47
USP54-204ENST00000422491 BTBD18B2RXH4 712 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 EYA2O00167 538 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 LIG3P49916 1009 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 SKIDA1Q1XH10 827 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 FILIP1LQ4L180 1135 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 KLHL10Q6JEL2 608 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 TBC1D10CQ8IV04 446 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 GPATCH11Q8N954 259 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 KCNH5Q8NCM2 988 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 ZNF496Q96IT1 587 aaPredicted RBP12.1□□□□□ -0.47
USP54-204ENST00000422491 MMS19Q96T76 1030 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 REXO2Q9Y3B8 237 aaKnown RBP12.1□□□□□ -0.47
USP54-204ENST00000422491 FAM169AQ9Y6X4 670 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 STK36Q9NRP7 1315 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 H7C1W4 665 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 GPAA1O43292 621 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 FAM76AQ8TAV0 307 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 SLF1Q9BQI6 1058 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 TRIM10Q9UDY6 481 aa12.1□□□□□ -0.47
USP54-204ENST00000422491 SRPRBQ9Y5M8 271 aaKnown RBP12.1□□□□□ -0.47
USP54-204ENST00000422491 ZBTB43O43298 467 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 MMP1P03956 469 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 MYBL2P10244 700 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 CDC25AP30304 524 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 HNRNPH1P31943 449 aaKnown RBP12.09□□□□□ -0.47
USP54-204ENST00000422491 SLC52A2Q9HAB3 445 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 HDAC6Q9UBN7 1215 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 GRIN2DO15399 1336 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 PPP1R3GB7ZBB8 358 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 EBAG9O00559 213 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 RILPL1Q5EBL4 403 aa12.09□□□□□ -0.47
USP54-204ENST00000422491 NBPF14Q5TI25 921 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms