RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 DCCP43146 1447 aa24.2■■□□□ 1.46
USP48-205ENST00000421625 ATP2B1P20020 1258 aa24.2■■□□□ 1.46
USP48-205ENST00000421625 MCAMP43121 646 aa24.2■■□□□ 1.46
USP48-205ENST00000421625 TMEM67Q5HYA8 995 aa24.2■■□□□ 1.46
USP48-205ENST00000421625 ACRBPQ8NEB7 543 aa24.2■■□□□ 1.46
USP48-205ENST00000421625 SPATA31A3Q5VYP0 1347 aa24.2■■□□□ 1.46
USP48-205ENST00000421625 MAP3K15Q6ZN16 1313 aa24.2■■□□□ 1.46
USP48-205ENST00000421625 LAMB4A4D0S4 1761 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 ALS2Q96Q42 1657 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 POTEB2H3BUK9 544 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 ERLIN1O75477 346 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 CD44P16070 742 aaKnown RBP24.19■■□□□ 1.46
USP48-205ENST00000421625 RASGRP2Q7LDG7 609 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 TRIML1Q8N9V2 468 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 NUP188Q5SRE5 1749 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 CTAGE9A4FU28 777 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 PHACTR2O75167 634 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 MMP1P03956 469 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 CASP1P29466 404 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 CASP14P31944 242 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 ADD2P35612 726 aa24.19■■□□□ 1.46
USP48-205ENST00000421625 MFAP3LO75121 409 aa24.18■■□□□ 1.46
USP48-205ENST00000421625 EIF3JO75822 258 aaKnown RBP24.18■■□□□ 1.46
USP48-205ENST00000421625 PBX1P40424 430 aa24.18■■□□□ 1.46
USP48-205ENST00000421625 NR5A1Q13285 461 aa24.18■■□□□ 1.46
USP48-205ENST00000421625 TMEM87BQ96K49 555 aa24.18■■□□□ 1.46
USP48-205ENST00000421625 NAA15Q9BXJ9 866 aaKnown RBP24.18■■□□□ 1.46
USP48-205ENST00000421625 SLAIN2Q9P270 581 aa24.18■■□□□ 1.46
USP48-205ENST00000421625 TNS3Q68CZ2 1445 aa24.18■■□□□ 1.46
USP48-205ENST00000421625 FMNL1O95466 1100 aaPredicted RBP24.17■■□□□ 1.46
USP48-205ENST00000421625 ERCC5P28715 1186 aaPredicted RBP24.17■■□□□ 1.46
USP48-205ENST00000421625 CASP8Q14790 479 aa24.17■■□□□ 1.46
USP48-205ENST00000421625 CCDC82Q8N4S0 544 aa24.17■■□□□ 1.46
USP48-205ENST00000421625 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.17■■□□□ 1.462e-9■■□□□ 13.1
USP48-205ENST00000421625 ADD3Q9UEY8 706 aaKnown RBP24.17■■□□□ 1.46
USP48-205ENST00000421625 FXR1P51114 621 aaKnown RBP eCLIP24.17■■□□□ 1.465e-7■■■■□ 25.7
USP48-205ENST00000421625 SPATA20Q8TB22 786 aa24.17■■□□□ 1.46
USP48-205ENST00000421625 CCDC102AQ96A19 550 aa24.17■■□□□ 1.46
USP48-205ENST00000421625 CSRNP2Q9H175 543 aa24.17■■□□□ 1.46
USP48-205ENST00000421625 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.17■■□□□ 1.462e-7■■■■□ 24
USP48-205ENST00000421625 SGMS1Q86VZ5 419 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 SMYD4Q8IYR2 804 aaPredicted RBP24.16■■□□□ 1.46
USP48-205ENST00000421625 SLC12A7Q9Y666 1083 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 SYNRGQ9UMZ2 1314 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 AFMP43652 599 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 SAFBQ15424 915 aaKnown RBP eCLIP24.16■■□□□ 1.46
USP48-205ENST00000421625 SPATA1Q5VX52 437 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 CERS3Q8IU89 383 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 CMTR1Q8N1G2 835 aaKnown RBP24.16■■□□□ 1.46
USP48-205ENST00000421625 NOA1Q8NC60 698 aaKnown RBP24.16■■□□□ 1.46
USP48-205ENST00000421625 STK36Q9NRP7 1315 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 IDH1O75874 414 aaKnown RBP24.16■■□□□ 1.46
USP48-205ENST00000421625 GYPCP04921 128 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 TAF7LQ5H9L4 462 aa24.16■■□□□ 1.46
USP48-205ENST00000421625 PIH1D3Q9NQM4 214 aaKnown RBP24.16■■□□□ 1.46
USP48-205ENST00000421625 PLEKHG2Q9H7P9 1386 aa24.15■■□□□ 1.46
USP48-205ENST00000421625 A0A087X0B3 334 aa24.15■■□□□ 1.46
USP48-205ENST00000421625 COBLO75128 1261 aa24.15■■□□□ 1.46
USP48-205ENST00000421625 IVLP07476 585 aa24.15■■□□□ 1.46
USP48-205ENST00000421625 OXER1Q8TDS5 423 aa24.15■■□□□ 1.46
USP48-205ENST00000421625 SRPRBQ9Y5M8 271 aaKnown RBP24.15■■□□□ 1.46
USP48-205ENST00000421625 TACC3Q9Y6A5 838 aa24.15■■□□□ 1.46
USP48-205ENST00000421625 CTAGE15A4D2H0 777 aa24.14■■□□□ 1.46
USP48-205ENST00000421625 LRRIQ3A6PVS8 624 aaPredicted RBP24.14■■□□□ 1.46
USP48-205ENST00000421625 IFIT3O14879 490 aaKnown RBP24.14■■□□□ 1.46
USP48-205ENST00000421625 CTAGE8P0CG41 777 aa24.14■■□□□ 1.46
USP48-205ENST00000421625 CTDSPL2Q05D32 466 aa24.14■■□□□ 1.46
USP48-205ENST00000421625 CUL4BQ13620 913 aa24.14■■□□□ 1.46
USP48-205ENST00000421625 RILPL1Q5EBL4 403 aa24.14■■□□□ 1.46
USP48-205ENST00000421625 CTAGE6Q86UF2 777 aa24.14■■□□□ 1.46
USP48-205ENST00000421625 CTAGE4Q8IX94 777 aa24.14■■□□□ 1.46
USP48-205ENST00000421625 NAPGQ99747 312 aaPredicted RBP24.14■■□□□ 1.46
USP48-205ENST00000421625 ZSWIM5Q9P217 1185 aa24.14■■□□□ 1.46
USP48-205ENST00000421625 STRCQ7RTU9 1775 aa24.14■■□□□ 1.45
USP48-205ENST00000421625 ZNF532Q9HCE3 1301 aa24.14■■□□□ 1.45
USP48-205ENST00000421625 MYO5AQ9Y4I1 1855 aaKnown RBP24.14■■□□□ 1.45
USP48-205ENST00000421625 ERVK-24P63145 666 aa24.14■■□□□ 1.45
USP48-205ENST00000421625 MSL3Q8N5Y2 521 aaKnown RBP24.14■■□□□ 1.45
USP48-205ENST00000421625 IFNAR1P17181 557 aa24.13■■□□□ 1.45
USP48-205ENST00000421625 NOP2P46087 812 aaKnown RBP24.13■■□□□ 1.45
USP48-205ENST00000421625 CDKAL1Q5VV42 579 aa24.13■■□□□ 1.45
USP48-205ENST00000421625 ZNF579Q8NAF0 562 aaKnown RBP24.13■■□□□ 1.45
USP48-205ENST00000421625 PKD1L3Q7Z443 1732 aa24.13■■□□□ 1.45
USP48-205ENST00000421625 KANK3Q6NY19 840 aa24.13■■□□□ 1.45
USP48-205ENST00000421625 MYH8P13535 1937 aa24.13■■□□□ 1.45
USP48-205ENST00000421625 AKAP11Q9UKA4 1901 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 CDC25AP30304 524 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 CCT6AP40227 531 aaKnown RBP24.12■■□□□ 1.45
USP48-205ENST00000421625 TUBB2AQ13885 445 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 NCAPH2Q6IBW4 605 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 TUBB2BQ9BVA1 445 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 PRDM11Q9NQV5 511 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 TTF2Q9UNY4 1162 aaKnown RBP24.12■■□□□ 1.45
USP48-205ENST00000421625 ABCC12Q96J65 1359 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 EPSTI1Q96J88 318 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 FOXP1Q9H334 677 aaPredicted RBP24.12■■□□□ 1.45
USP48-205ENST00000421625 WWC3Q9ULE0 1092 aa24.12■■□□□ 1.45
USP48-205ENST00000421625 XIRP1Q702N8 1843 aaKnown RBP24.12■■□□□ 1.45
USP48-205ENST00000421625 RNF225M0QZC1 329 aaPredicted RBP24.11■■□□□ 1.45
USP48-205ENST00000421625 RPS6KA5O75582 802 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 226.3 ms