RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 DUSP27Q5VZP5 1158 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 PMFBP1Q8TBY8 1022 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 MFSD14AQ96MC6 490 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 LRRC3Q9BY71 257 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 LNPKQ9C0E8 428 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 BRMS1Q9HCU9 246 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 GINM1Q9NU53 330 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 ADAM30Q9UKF2 790 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 STRIP2Q9ULQ0 834 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 SOX9P48436 509 aa7.04□□□□□ -1.28
VPS54-204ENST00000416400 YARSP54577 528 aaKnown RBP7.04□□□□□ -1.28
VPS54-204ENST00000416400 CHMP4BP1P59074 171 aa7.04□□□□□ -1.28
VPS54-204ENST00000416400 CYP27C1Q4G0S4 372 aa7.04□□□□□ -1.28
VPS54-204ENST00000416400 SOGA3Q5TF21 947 aa7.04□□□□□ -1.28
VPS54-204ENST00000416400 METTL22Q9BUU2 404 aaPredicted RBP7.04□□□□□ -1.28
VPS54-204ENST00000416400 OSBPL1AQ9BXW6 950 aa7.04□□□□□ -1.28
VPS54-204ENST00000416400 PCDHB14Q9Y5E9 798 aa7.04□□□□□ -1.28
VPS54-204ENST00000416400 WDR64B1ANS9 1081 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 LRIG2O94898 1065 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 HTR3BO95264 441 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 CRKP46108 304 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 RBL2Q08999 1139 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 CDK5R2Q13319 367 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 SLC6A19Q695T7 634 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 GK5Q6ZS86 529 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 ZAR1Q86SH2 424 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 SLITRK4Q8IW52 837 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 REXO1Q8N1G1 1221 aaKnown RBP7.03□□□□□ -1.28
VPS54-204ENST00000416400 FOXQ1Q9C009 403 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 CORINQ9Y5Q5 1042 aa7.03□□□□□ -1.28
VPS54-204ENST00000416400 DYNC1LI2O43237 492 aaPredicted RBP7.02□□□□□ -1.29
VPS54-204ENST00000416400 PRSS36Q5K4E3 855 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 FBXW10Q5XX13 1052 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 ARHGAP27Q6ZUM4 889 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 ARMCX6Q7L4S7 300 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 CKAP2LQ8IYA6 745 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 MFSD2AQ8NA29 543 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 FAM13CQ8NE31 585 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 TMEM87BQ96K49 555 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 FERD3LQ96RJ6 166 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 ZNF408Q9H9D4 720 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 REV1Q9UBZ9 1251 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 KLHL3Q9UH77 587 aa7.02□□□□□ -1.29
VPS54-204ENST00000416400 POLR3KQ9Y2Y1 108 aaPredicted RBP7.02□□□□□ -1.29
VPS54-204ENST00000416400 FAM87AP0C7U9 286 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 IMPDH2P12268 514 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 NTF4P34130 210 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 LRRFIP1Q32MZ4 808 aaKnown RBP7.01□□□□□ -1.29
VPS54-204ENST00000416400 OGFOD3Q6PK18 319 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 MCATQ8IVS2 390 aaKnown RBP7.01□□□□□ -1.29
VPS54-204ENST00000416400 MRPL41Q8IXM3 137 aaKnown RBP7.01□□□□□ -1.29
VPS54-204ENST00000416400 TOP6BLQ8N6T0 577 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 SHKBP1Q8TBC3 707 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 CPLX3Q8WVH0 158 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 CRBNQ96SW2 442 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 FBRSQ9HAH7 460 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 PRDM10Q9NQV6 1147 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 C1GALT1Q9NS00 363 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 TJP2Q9UDY2 1190 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 LEMD3Q9Y2U8 911 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 PRR36Q9H6K5 1346 aa7.01□□□□□ -1.29
VPS54-204ENST00000416400 CST3P01034 146 aaPredicted RBP7□□□□□ -1.29
VPS54-204ENST00000416400 CAP2P40123 477 aa7□□□□□ -1.29
VPS54-204ENST00000416400 SLBPQ14493 270 aaKnown RBP eCLIP7□□□□□ -1.29
VPS54-204ENST00000416400 CPSF6Q16630 551 aaKnown RBP eCLIP7□□□□□ -1.29
VPS54-204ENST00000416400 CCDC144BQ3MJ40 725 aa7□□□□□ -1.29
VPS54-204ENST00000416400 TMEM201Q5SNT2 666 aa7□□□□□ -1.29
VPS54-204ENST00000416400 PRAMEF13Q5VWM6 474 aa7□□□□□ -1.29
VPS54-204ENST00000416400 SEZ6L2Q6UXD5 910 aa7□□□□□ -1.29
VPS54-204ENST00000416400 XAGE3Q8WTP9 111 aa7□□□□□ -1.29
VPS54-204ENST00000416400 MIPEPQ99797 713 aa7□□□□□ -1.29
VPS54-204ENST00000416400 SRRTQ9BXP5 876 aaKnown RBP7□□□□□ -1.29
VPS54-204ENST00000416400 EHMT1Q9H9B1 1298 aa7□□□□□ -1.29
VPS54-204ENST00000416400 MRVI1Q9Y6F6 885 aa7□□□□□ -1.29
VPS54-204ENST00000416400 SMARCA5O60264 1052 aaPredicted RBP6.99□□□□□ -1.29
VPS54-204ENST00000416400 ATE1O95260 518 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 F13BP05160 661 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 ADMP35318 185 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 GRIK1P39086 918 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 CLCQ05315 142 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 NKG7Q16617 165 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 ZNF746Q6NUN9 644 aaPredicted RBP6.99□□□□□ -1.29
VPS54-204ENST00000416400 UBE3DQ7Z6J8 389 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 PHACTR4Q8IZ21 702 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 ACSF2Q96CM8 615 aaPredicted RBP6.99□□□□□ -1.29
VPS54-204ENST00000416400 DUSP23Q9BVJ7 150 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 KRTAP4-8Q9BYQ9 185 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 OSBPL2Q9H1P3 480 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 GTF2IRD1Q9UHL9 959 aa6.99□□□□□ -1.29
VPS54-204ENST00000416400 TPX2Q9ULW0 747 aaKnown RBP6.99□□□□□ -1.29
VPS54-204ENST00000416400 FAM170BA6NMN3 283 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 RAG1P15918 1043 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 CYP7A1P22680 504 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 NBPF6Q5VWK0 638 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 CCDC81Q6ZN84 652 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 ZNF765Q7L2R6 523 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 NOP9Q86U38 636 aaKnown RBP6.98□□□□□ -1.29
VPS54-204ENST00000416400 FAM177A1Q8N128 213 aaPredicted RBP6.98□□□□□ -1.29
VPS54-204ENST00000416400 NBPF4Q96M43 638 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 DPH2Q9BQC3 489 aaPredicted RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms