RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 PCP11498 1178 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 ZAP70P43403 619 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 SSRP1Q08945 709 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 SPATA1Q5VX52 437 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 TBC1D10CQ8IV04 446 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 STAG1Q8WVM7 1258 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 GSDMAQ96QA5 445 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 STRBPQ96SI9 672 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 CARD6Q9BX69 1037 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 GPHNQ9NQX3 736 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 ANAPC4Q9UJX5 808 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 URI1O94763 535 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 FGFR2P21802 821 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 CDC27P30260 824 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 MCAMP43121 646 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 TOB1P50616 345 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 SF3B2Q13435 895 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 CUL4BQ13620 913 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 SAFBQ15424 915 aaKnown RBP eCLIP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 WHAMMP3Q1A5X7 153 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 CHST3Q7LGC8 479 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 FAM177A1Q8N128 213 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 SMARCE1Q969G3 411 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 FERMT2Q96AC1 680 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 RNF26Q9BY78 433 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 VIPAS39Q9H9C1 493 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 ADD3Q9UEY8 706 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 CDC23Q9UJX2 597 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 TTF2Q9UNY4 1162 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 MROH5Q6ZUA9 1318 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 A0A087WWV3 80 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 AKR1B15C9JRZ8 316 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 PIP4K2AP48426 406 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 PDE4BQ07343 736 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 IFIT5Q13325 482 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 SCARF1Q14162 830 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 WASHC4Q2M389 1173 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 OTUD7BQ6GQQ9 843 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 CNGA4Q8IV77 575 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 RUBCNQ92622 972 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 ERCC4Q92889 916 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 PUS3Q9BZE2 481 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 GBP3Q9H0R5 595 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 STRN4Q9NRL3 753 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 NFE2L3Q9Y4A8 694 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 ADGRG1Q9Y653 693 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 KIF13BQ9NQT8 1826 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 TNRC6CQ9HCJ0 1690 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 GOLGA8AA7E2F4 631 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 TMEM232C9JQI7 657 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 BIN1O00499 593 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 ADORA1P30542 326 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 FKBP4Q02790 459 aaKnown RBP eCLIP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 SPAG1Q07617 926 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 SMC1AQ14683 1233 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 WDR93Q6P2C0 686 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 TRIM22Q8IYM9 498 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 GOLGA5Q8TBA6 731 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 WDR24Q96S15 920 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 PARD6BQ9BYG5 372 aa6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 LIMA1Q9UHB6 759 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-203ENST00000412148 COL5A3P25940 1745 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 ERLIN1O75477 346 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 SASH3O75995 380 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 PDE8BO95263 885 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 FGRP09769 529 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 PDE6AP16499 860 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 MARCKSP29966 332 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 GNG11P61952 73 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 PIP4K2BP78356 416 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 AKNAD1Q5T1N1 836 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 GIGYF2Q6Y7W6 1299 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 TMTC1Q8IUR5 882 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 ZCRB1Q8TBF4 217 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 ZNF594Q96JF6 807 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 MED15Q96RN5 788 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 TMEM51Q9NW97 253 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 CWC15Q9P013 229 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 ERVV-1B6SEH8 477 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 MFAP3LO75121 409 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 CLSTN1O94985 981 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 MCM3P25205 808 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 HOXA7P31268 230 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 TRAPPC10P48553 1259 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 FOSBP53539 338 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 HAND2P61296 217 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 FMR1Q06787 632 aaKnown RBP eCLIP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 BEND6Q5SZJ8 279 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 HDXQ7Z353 690 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 CRACR2BQ8N4Y2 399 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 TTLL11Q8NHH1 800 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 RPGRIP1Q96KN7 1286 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 CARD10Q9BWT7 1032 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 RNF41Q9H4P4 317 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 MED4Q9NPJ6 270 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 SLC12A7Q9Y666 1083 aa6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 COL14A1Q05707 1796 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-203ENST00000412148 EIF3JO75822 258 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 IVLP07476 585 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms