RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 RNF180Q86T96 592 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 ZMAT2Q96NC0 199 aaKnown RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 ARMT1Q9H993 441 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 MSRAQ9UJ68 235 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 ARID4AP29374 1257 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 SSTR3P32745 418 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 MCM5P33992 734 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 AMPD3Q01432 767 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 TTC31Q49AM3 519 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 ELMOD1Q8N336 334 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 NAP1L3Q99457 506 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 ZNHIT6Q9NWK9 470 aaKnown RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 ARPP21Q9UBL0 812 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 FAM50BQ9Y247 325 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 NOC2LQ9Y3T9 749 aaKnown RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 SMARCA5O60264 1052 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 RARBP10826 455 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 C6orf163Q5TEZ5 329 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 PRR5LQ6MZQ0 368 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 PHACTR3Q96KR7 559 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 A0A1B0GUA9 196 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 CYP27B1O15528 508 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 GPC2Q8N158 579 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 C8orf58Q8NAV2 365 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 RHPN1Q8TCX5 695 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 MIPOL1Q8TD10 442 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 RSBN1LQ6PCB5 846 aaPredicted RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 TTC30AQ86WT1 665 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 C7orf31Q8N865 590 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 TDRD3Q9H7E2 651 aaKnown RBP8.25□□□□□ -1.09
SCN9A-202ENST00000409435 CYP19A1P11511 503 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-202ENST00000409435 STRN3Q13033 797 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 RTN1Q16799 776 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 GOLGA1Q92805 767 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 CNTNAP4Q9C0A0 1308 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 PSMD14O00487 310 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 SPECC1LQ69YQ0 1117 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 NLRP10Q86W26 655 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 LRRC45Q96CN5 670 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 CDCA7LQ96GN5 454 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 ATP11BQ9Y2G3 1177 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 DPYSL4O14531 572 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 GDF11O95390 407 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 INHBEP58166 350 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 CEBPZQ03701 1054 aaKnown RBP8.24□□□□□ -1.09
SCN9A-202ENST00000409435 FOXP4Q8IVH2 680 aaPredicted RBP8.24□□□□□ -1.09
SCN9A-202ENST00000409435 RNF208Q9H0X6 261 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 GREM2Q9H772 168 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 MYOZ2Q9NPC6 264 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 DDX39AO00148 427 aaKnown RBP8.24□□□□□ -1.09
SCN9A-202ENST00000409435 HSPA4P34932 840 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 GBP6Q6ZN66 633 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 RBM46Q8TBY0 533 aaKnown RBP8.24□□□□□ -1.09
SCN9A-202ENST00000409435 DDX23Q9BUQ8 820 aaKnown RBP8.24□□□□□ -1.09
SCN9A-202ENST00000409435 SYNCQ9H7C4 482 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 SEC31BQ9NQW1 1179 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 ATP6V0A2Q9Y487 856 aa8.24□□□□□ -1.09
SCN9A-202ENST00000409435 M0R2C6 588 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 NEK4P51957 841 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 BANK1Q8NDB2 785 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 RSRC1Q96IZ7 334 aaKnown RBP8.23□□□□□ -1.09
SCN9A-202ENST00000409435 ZSCAN31Q96LW9 406 aaPredicted RBP8.23□□□□□ -1.09
SCN9A-202ENST00000409435 SLC26A6Q9BXS9 759 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 RGS2P41220 211 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 MCM2P49736 904 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 MCMDC2Q4G0Z9 681 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 DPH6Q7L8W6 267 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 EXOC6Q8TAG9 804 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 SPATA31D1Q6ZQQ2 1576 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 GCOM1H8Y6P7 765 aaPredicted RBP8.23□□□□□ -1.09
SCN9A-202ENST00000409435 KCNQ3O43525 872 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 SORBS3O60504 671 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 POLR2MP0CAP2 368 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 TIMM10P62072 90 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 CHD1LQ86WJ1 897 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 YAF2Q8IY57 180 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 NRBP2Q9NSY0 501 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 DACH1Q9UI36 760 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 USP17L10C9JJH3 530 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 HARSP12081 509 aaKnown RBP8.23□□□□□ -1.09
SCN9A-202ENST00000409435 SMTNP53814 917 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 YARSP54577 528 aaKnown RBP8.23□□□□□ -1.09
SCN9A-202ENST00000409435 CCDC160A6NGH7 325 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 NEURL1BA8MQ27 555 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 TMEM232C9JQI7 657 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 DYNC1I1O14576 645 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 CHMP2AO43633 222 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 GPSM2P81274 684 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 FSTL1Q12841 308 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 SAMD7Q7Z3H4 446 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 AGBL3Q8NEM8 1001 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 ADPGKQ9BRR6 497 aa8.23□□□□□ -1.09
SCN9A-202ENST00000409435 ZBTB43O43298 467 aa8.22□□□□□ -1.09
SCN9A-202ENST00000409435 MMP14P50281 582 aa8.22□□□□□ -1.09
SCN9A-202ENST00000409435 SLFN13Q68D06 897 aa8.22□□□□□ -1.09
SCN9A-202ENST00000409435 EIF4E1BA6NMX2 242 aaKnown RBP8.22□□□□□ -1.09
SCN9A-202ENST00000409435 FAM13AO94988 1023 aa8.22□□□□□ -1.09
SCN9A-202ENST00000409435 RGMBQ6NW40 437 aa8.22□□□□□ -1.09
SCN9A-202ENST00000409435 OTUD6AQ7L8S5 288 aa8.22□□□□□ -1.09
SCN9A-202ENST00000409435 TRMT44Q8IYL2 757 aaKnown RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms