RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 SLC43A3Q8NBI5 491 aa6.98□□□□□ -1.29
CLK1-202ENST00000409403 ZNF526Q8TF50 670 aaPredicted RBP6.98□□□□□ -1.29
CLK1-202ENST00000409403 PDGFDQ9GZP0 370 aaPredicted RBP6.98□□□□□ -1.29
CLK1-202ENST00000409403 SH2B1Q9NRF2 756 aaPredicted RBP6.98□□□□□ -1.29
CLK1-202ENST00000409403 NRAPQ86VF7 1730 aa6.98□□□□□ -1.29
CLK1-202ENST00000409403 AATKQ6ZMQ8 1374 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 PARD3Q8TEW0 1356 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 F6X3S4 739 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 ZBTB7AO95365 584 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 ALBP02768 609 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 ZNF157P51786 506 aaPredicted RBP6.97□□□□□ -1.29
CLK1-202ENST00000409403 HTRA3P83110 453 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 ZNF423Q2M1K9 1284 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 C20orf204Q6ZNR8 217 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 C1orf229Q6ZS94 237 aaPredicted RBP6.97□□□□□ -1.29
CLK1-202ENST00000409403 JMYQ8N9B5 988 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 PHC3Q8NDX5 983 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 EDARADDQ8WWZ3 215 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 DRC1Q96MC2 740 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 LAS1LQ9Y4W2 734 aaKnown RBP6.97□□□□□ -1.29
CLK1-202ENST00000409403 THSD7AQ9UPZ6 1657 aa6.97□□□□□ -1.29
CLK1-202ENST00000409403 CENPJQ9HC77 1338 aaPredicted RBP6.97□□□□□ -1.29
CLK1-202ENST00000409403 MINDY4BA8MYZ0 360 aa6.96□□□□□ -1.29
CLK1-202ENST00000409403 ESRRAP11474 423 aaPredicted RBP6.96□□□□□ -1.29
CLK1-202ENST00000409403 EPHA1P21709 976 aa6.96□□□□□ -1.29
CLK1-202ENST00000409403 IKBKEQ14164 716 aa6.96□□□□□ -1.29
CLK1-202ENST00000409403 GPR162Q16538 588 aa6.96□□□□□ -1.29
CLK1-202ENST00000409403 TTBK2Q6IQ55 1244 aa6.96□□□□□ -1.29
CLK1-202ENST00000409403 GALNT6Q8NCL4 622 aa6.96□□□□□ -1.29
CLK1-202ENST00000409403 SPON2Q9BUD6 331 aa6.96□□□□□ -1.29
CLK1-202ENST00000409403 SAMM50Q9Y512 469 aa6.96□□□□□ -1.29
CLK1-202ENST00000409403 TONSLQ96HA7 1378 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 PCNTO95613 3336 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 H3BRJ5 948 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 LILRB5O75023 590 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 PAGE1O75459 146 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 SLURP2P0DP57 97 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 EIF4A3P38919 411 aaKnown RBP6.96□□□□□ -1.3
CLK1-202ENST00000409403 GJA8P48165 433 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 RPS26P62854 115 aaKnown RBP6.96□□□□□ -1.3
CLK1-202ENST00000409403 PAK2Q13177 524 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 GRIK5Q16478 980 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 NBPF8Q3BBV2 869 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 PCNX4Q63HM2 1172 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 AGMOQ6ZNB7 445 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 KIAA0825Q8IV33 1275 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 IL22RA1Q8N6P7 574 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 RHOVQ96L33 236 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 LRRC4BQ9NT99 713 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 ADAMTS1Q9UHI8 967 aa6.96□□□□□ -1.3
CLK1-202ENST00000409403 M0R082 166 aa6.95□□□□□ -1.3
CLK1-202ENST00000409403 OIP5O43482 229 aa6.95□□□□□ -1.3
CLK1-202ENST00000409403 AFF1P51825 1210 aaKnown RBP6.95□□□□□ -1.3
CLK1-202ENST00000409403 NFKBIBQ15653 356 aa6.95□□□□□ -1.3
CLK1-202ENST00000409403 CHSY3Q70JA7 882 aa6.95□□□□□ -1.3
CLK1-202ENST00000409403 ZNF417Q8TAU3 575 aa6.95□□□□□ -1.3
CLK1-202ENST00000409403 DDX54Q8TDD1 881 aaKnown RBP6.95□□□□□ -1.3
CLK1-202ENST00000409403 FRAT1Q92837 279 aaPredicted RBP6.95□□□□□ -1.3
CLK1-202ENST00000409403 ZNF587Q96SQ5 575 aaPredicted RBP6.95□□□□□ -1.3
CLK1-202ENST00000409403 TLR6Q9Y2C9 796 aa6.95□□□□□ -1.3
CLK1-202ENST00000409403 PPME1Q9Y570 386 aa6.95□□□□□ -1.3
CLK1-202ENST00000409403 XRN1Q8IZH2 1706 aaKnown RBP6.95□□□□□ -1.3
CLK1-202ENST00000409403 ABCA3Q99758 1704 aa6.95□□□□□ -1.3
CLK1-202ENST00000409403 GOLGB1Q14789 3259 aaKnown RBP6.94□□□□□ -1.3
CLK1-202ENST00000409403 TRIM37O94972 964 aa6.94□□□□□ -1.3
CLK1-202ENST00000409403 BCRP11274 1271 aa6.94□□□□□ -1.3
CLK1-202ENST00000409403 NME2P22392 152 aa6.94□□□□□ -1.3
CLK1-202ENST00000409403 GPRASP2Q96D09 838 aa6.94□□□□□ -1.3
CLK1-202ENST00000409403 TANGO6Q9C0B7 1094 aa6.94□□□□□ -1.3
CLK1-202ENST00000409403 PNNQ9H307 717 aaKnown RBP6.94□□□□□ -1.3
CLK1-202ENST00000409403 NUDCQ9Y266 331 aa6.94□□□□□ -1.3
CLK1-202ENST00000409403 SOX1O00570 391 aaPredicted RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 APBA3O96018 575 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 LORP23490 312 aaPredicted RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 LMNB2Q03252 620 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 ARID5AQ03989 594 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 CAMK2GQ13555 558 aaPredicted RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 FAM117BQ6P1L5 589 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 VPS37DQ86XT2 251 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 SULF2Q8IWU5 870 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 ZNF296Q8WUU4 475 aaPredicted RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 BTBD6Q96KE9 485 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 GMLQ99445 158 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 SOX17Q9H6I2 414 aaPredicted RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 KCNQ5Q9NR82 932 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 PRKAG2Q9UGJ0 569 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 KIAA1107Q9UPP5 1409 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 GCC2Q8IWJ2 1684 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 PLEKHH2Q8IVE3 1493 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 RGPD3A6NKT7 1758 aaPredicted RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 RGPD4Q7Z3J3 1758 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 EIF4EBP3O60516 100 aaPredicted RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 PF4P02776 101 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 HSPA1AP0DMV8 641 aaKnown RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 HSPA1BP0DMV9 641 aaKnown RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 TFE3P19532 575 aaPredicted RBP6.93□□□□□ -1.3
CLK1-202ENST00000409403 LMNB1P20700 586 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 BMP6P22004 513 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 CDC25BP30305 580 aa6.93□□□□□ -1.3
CLK1-202ENST00000409403 DNAJA1P31689 397 aaKnown RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms