RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 KRI1Q8N9T8 703 aaKnown RBP10.37□□□□□ -0.75
LIG4-202ENST00000405925 KIFC2Q96AC6 838 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 LZTS2Q9BRK4 669 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 HOMER2Q9NSB8 354 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 ZMYM6O95789 1325 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 NALCNQ8IZF0 1738 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 LIG1P18858 919 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 CRKP46108 304 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 NSMFQ6X4W1 530 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 PLIN2Q99541 437 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 TDRD3Q9H7E2 651 aaKnown RBP10.36□□□□□ -0.75
LIG4-202ENST00000405925 ZNHIT6Q9NWK9 470 aaKnown RBP10.36□□□□□ -0.75
LIG4-202ENST00000405925 SP4Q02446 784 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 WWC2Q6AWC2 1192 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 SPICE1Q8N0Z3 855 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 DCPSQ96C86 337 aaKnown RBP10.36□□□□□ -0.75
LIG4-202ENST00000405925 MPHOSPH6Q99547 160 aaKnown RBP10.36□□□□□ -0.75
LIG4-202ENST00000405925 PKD2L1Q9P0L9 805 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 BRD1O95696 1058 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 CFBP00751 764 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 SLFN13Q68D06 897 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 CCDC174Q6PII3 467 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 FBXO41Q8TF61 875 aa10.36□□□□□ -0.75
LIG4-202ENST00000405925 GOPCQ9HD26 462 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 INCENPQ9NQS7 918 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 SLIT3O75094 1523 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 PPP1R12BO60237 982 aaPredicted RBP10.35□□□□□ -0.75
LIG4-202ENST00000405925 ADCY7P51828 1080 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 CT47A1Q5JQC4 288 aaPredicted RBP10.35□□□□□ -0.75
LIG4-202ENST00000405925 RRAGBQ5VZM2 374 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 ATL3Q6DD88 541 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 PPP4R3AQ6IN85 833 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 SLC16A10Q8TF71 515 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 TSG101Q99816 390 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 PI4KBQ9UBF8 816 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 CHD2O14647 1828 aaKnown RBP10.35□□□□□ -0.75
LIG4-202ENST00000405925 RGPD8O14715 1765 aaPredicted RBP10.35□□□□□ -0.75
LIG4-202ENST00000405925 ASIC1P78348 528 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 NONOQ15233 471 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIG4-202ENST00000405925 TTC38Q5R3I4 469 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 MIGA2Q7L4E1 593 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 REXO1Q8N1G1 1221 aaKnown RBP10.35□□□□□ -0.75
LIG4-202ENST00000405925 SLC44A5Q8NCS7 719 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 UIMC1Q96RL1 719 aa10.35□□□□□ -0.75
LIG4-202ENST00000405925 DHX36Q9H2U1 1008 aaKnown RBP10.35□□□□□ -0.75
LIG4-202ENST00000405925 DCP1AQ9NPI6 582 aaPredicted RBP10.35□□□□□ -0.75
LIG4-202ENST00000405925 TBCAO75347 108 aaKnown RBP10.34□□□□□ -0.75
LIG4-202ENST00000405925 KIF20AO95235 890 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 LARGE1O95461 756 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 TICAM2Q86XR7 235 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 TBC1D10CQ8IV04 446 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 CHURC1Q8WUH1 139 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 GPKOWQ92917 476 aaPredicted RBP eCLIP10.34□□□□□ -0.75
LIG4-202ENST00000405925 SWAP70Q9UH65 585 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 MTMR6Q9Y217 621 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 LEO1Q8WVC0 666 aaPredicted RBP10.34□□□□□ -0.75
LIG4-202ENST00000405925 ARID3AQ99856 593 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 ABCC12Q96J65 1359 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 SMCO2A6NFE2 343 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 FAM196BA6NMK8 535 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 BTBD18B2RXH4 712 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 DDAH1O94760 285 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 CDK8P49336 464 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 TBC1D10BQ4KMP7 808 aaPredicted RBP10.34□□□□□ -0.75
LIG4-202ENST00000405925 HSP90AA4PQ58FG1 418 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 SPECC1Q5M775 1068 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 MYSM1Q5VVJ2 828 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 CHAMP1Q96JM3 812 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 PDCL3Q9H2J4 239 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 DEF6Q9H4E7 631 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 EXOC1Q9NV70 894 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 MROH7-TTC4A0A0A0MT08 1334 aa10.34□□□□□ -0.75
LIG4-202ENST00000405925 SH2B2O14492 632 aaPredicted RBP10.33□□□□□ -0.76
LIG4-202ENST00000405925 CCNT1O60563 726 aaKnown RBP10.33□□□□□ -0.76
LIG4-202ENST00000405925 SCG2P13521 617 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 CASP7P55210 303 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 IRX3P78415 501 aaPredicted RBP10.33□□□□□ -0.76
LIG4-202ENST00000405925 SYCP1Q15431 976 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 SLC10A5Q5PT55 438 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 KRT25Q7Z3Z0 450 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 ZBTB21Q9ULJ3 1066 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 GSG1L2A8MUP6 293 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 TMEM232C9JQI7 657 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 ZBED4O75132 1171 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 KLRK1P26718 216 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 LRSAM1Q6UWE0 723 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 C3orf67Q6ZVT6 689 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 FAM43AQ8N2R8 423 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 ZNF526Q8TF50 670 aaPredicted RBP10.33□□□□□ -0.76
LIG4-202ENST00000405925 GLT8D2Q9H1C3 349 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 DPEP1P16444 411 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 TXKP42681 527 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 ANO6Q4KMQ2 910 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 IQUBQ8NA54 791 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 NSUN7Q8NE18 718 aaKnown RBP10.33□□□□□ -0.76
LIG4-202ENST00000405925 FBXO18Q8NFZ0 1043 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 NSUN4Q96CB9 384 aaKnown RBP10.33□□□□□ -0.76
LIG4-202ENST00000405925 DNAJC25Q9H1X3 360 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 KANSL2Q9H9L4 492 aa10.33□□□□□ -0.76
LIG4-202ENST00000405925 LRRC4BQ9NT99 713 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms