RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CNKSR1Q969H4 720 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 UIMC1Q96RL1 719 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 VCX3BQ9H321 246 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 GOLGA6AQ9NYA3 693 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 RAD50Q92878 1312 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 EBAG9O00559 213 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 CASQ2O14958 399 aaPredicted RBP7.98□□□□□ -1.13
UPF2-203ENST00000397053 GCNT3O95395 438 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 EIF4A2Q14240 407 aaKnown RBP7.98□□□□□ -1.13
UPF2-203ENST00000397053 MTHFSDQ2M296 383 aaKnown RBP7.98□□□□□ -1.13
UPF2-203ENST00000397053 MFSD14BQ5SR56 506 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 CEP57Q86XR8 500 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 MICAL1Q8TDZ2 1067 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 UHRF1BP1LA0JNW5 1464 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 ANKRD36BQ8N2N9 1353 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 F13A1P00488 732 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 ASIC2Q16515 512 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 CCDC184Q52MB2 194 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 SCYL2Q6P3W7 929 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 C1orf228Q6PIY5 440 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 PDZD4Q76G19 769 aaPredicted RBP7.98□□□□□ -1.13
UPF2-203ENST00000397053 MIER3Q7Z3K6 550 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 TPH2Q8IWU9 490 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 FAM114A2Q9NRY5 505 aa7.98□□□□□ -1.13
UPF2-203ENST00000397053 TUBB4AP04350 444 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 LACTBP83111 547 aaPredicted RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 TTLL7Q6ZT98 887 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 CTAGE3PQ8IX95 158 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 BBS5Q8N3I7 341 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 PPP4R1Q8TF05 950 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 TSGA10Q9BZW7 698 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 MRPL44Q9H9J2 332 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 MAPK8IP1Q9UQF2 711 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 FLT4P35916 1363 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 C11orf95C9JLR9 678 aaPredicted RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 KIF3CO14782 793 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 TAF5LO75529 589 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 KCNA4P22459 653 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 RNASE9P60153 205 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 RPS8P62241 208 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 RNASELQ05823 741 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 CREB3L3Q68CJ9 461 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 RDH13Q8NBN7 331 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 TGFBRAP1Q8WUH2 860 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 PRDM10Q9NQV6 1147 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 RRP9O43818 475 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 TNNC2P02585 160 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 TUBBP07437 444 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 RHOXF2BP0C7M4 288 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 NAA25Q14CX7 972 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 KLHL40Q2TBA0 621 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 GKAP1Q5VSY0 366 aaPredicted RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 C2CD5Q86YS7 1000 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 KIAA0825Q8IV33 1275 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 RYBPQ8N488 228 aaPredicted RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 GPATCH11Q8N954 259 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 RHOXF2Q9BQY4 288 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 TRIM31Q9BZY9 425 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 VPS16Q9H269 839 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 BAG5Q9UL15 447 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 IFNB1P01574 187 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 SARNPP82979 210 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 SKIV2LQ15477 1246 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 CDC37L1Q7L3B6 337 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 DYMQ7RTS9 669 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 PLBD2Q8NHP8 589 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 LZTS2Q9BRK4 669 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 ZBED2Q9BTP6 218 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 PNMA2Q9UL42 364 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 GOLGA8CPA6NN73 597 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 RNMTO43148 476 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 XPOTO43592 962 aaKnown RBP7.97□□□□□ -1.13
UPF2-203ENST00000397053 MGEA5O60502 916 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 IGBP1P78318 339 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 MYL5Q02045 173 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 HHATQ5VTY9 493 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 NELFCDQ8IXH7 590 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 C8orf58Q8NAV2 365 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 GANCQ8TET4 914 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 TBC1D7Q9P0N9 293 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 IFNKQ9P0W0 207 aa7.97□□□□□ -1.13
UPF2-203ENST00000397053 I3L4J1 428 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 FLOT1O75955 427 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 GSTA1P08263 222 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 GSTA2P09210 222 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 KCNA6P17658 529 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 KRT15P19012 456 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 LIG4P49917 911 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 REXO1Q8N1G1 1221 aaKnown RBP7.96□□□□□ -1.13
UPF2-203ENST00000397053 LPIN2Q92539 896 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 APPBP2Q92624 585 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 ABCC5O15440 1437 aa7.96□□□□□ -1.13
UPF2-203ENST00000397053 TCP10L2B9ZVM9 353 aa7.96□□□□□ -1.14
UPF2-203ENST00000397053 GIGYF1O75420 1035 aaPredicted RBP7.96□□□□□ -1.14
UPF2-203ENST00000397053 TMEM191BP0C7N4 346 aa7.96□□□□□ -1.14
UPF2-203ENST00000397053 CAPN2P17655 700 aa7.96□□□□□ -1.14
UPF2-203ENST00000397053 TFAP4Q01664 338 aa7.96□□□□□ -1.14
UPF2-203ENST00000397053 CALCRLQ16602 461 aa7.96□□□□□ -1.14
UPF2-203ENST00000397053 Q3C1V9 767 aa7.96□□□□□ -1.14
UPF2-203ENST00000397053 DNAJC10Q8IXB1 793 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms