RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 HOMER1Q86YM7 354 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 SP8Q8IXZ3 490 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 KBTBD3Q8NAB2 608 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 SPATA5Q8NB90 893 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 ADAM21Q9UKJ8 722 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 LRRC37AA6NMS7 1700 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 C21orf2O43822 256 aa12.77□□□□□ -0.36
CUX1-204ENST00000393824 KINO60870 393 aaKnown RBP12.77□□□□□ -0.36
CUX1-204ENST00000393824 ALDH1B1P30837 517 aa12.77□□□□□ -0.36
CUX1-204ENST00000393824 FAM160A1Q05DH4 1040 aa12.77□□□□□ -0.36
CUX1-204ENST00000393824 COL9A3Q14050 684 aaPredicted RBP12.77□□□□□ -0.36
CUX1-204ENST00000393824 ICE2Q659A1 982 aa12.77□□□□□ -0.36
CUX1-204ENST00000393824 CCDC73Q6ZRK6 1079 aa12.77□□□□□ -0.36
CUX1-204ENST00000393824 CCDC129Q6ZRS4 1044 aa12.77□□□□□ -0.36
CUX1-204ENST00000393824 MYO5AQ9Y4I1 1855 aaKnown RBP12.77□□□□□ -0.36
CUX1-204ENST00000393824 SNED1Q8TER0 1413 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 ACTN2P35609 894 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 STYK1Q6J9G0 422 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 NLGN2Q8NFZ4 835 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 BRF1Q92994 677 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 ZNF512BQ96KM6 892 aaPredicted RBP12.77□□□□□ -0.37
CUX1-204ENST00000393824 FUT8Q9BYC5 575 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 XPO4Q9C0E2 1151 aaKnown RBP12.77□□□□□ -0.37
CUX1-204ENST00000393824 GOLPH3LQ9H4A5 285 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 BRMS1Q9HCU9 246 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 ARFGAP3Q9NP61 516 aa12.77□□□□□ -0.37
CUX1-204ENST00000393824 RRP15Q9Y3B9 282 aaKnown RBP12.77□□□□□ -0.37
CUX1-204ENST00000393824 C6orf229H3BNL8 230 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 RIMBP2O15034 1052 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 NAA16Q6N069 864 aaPredicted RBP12.76□□□□□ -0.37
CUX1-204ENST00000393824 TMC6Q7Z403 805 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.76□□□□□ -0.37
CUX1-204ENST00000393824 CARD6Q9BX69 1037 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 GGA1Q9UJY5 639 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 KIAA1551Q9HCM1 1747 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 POLD1P28340 1107 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 HIBADHP31937 336 aaKnown RBP12.76□□□□□ -0.37
CUX1-204ENST00000393824 EVCP57679 992 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 GRIK5Q16478 980 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 TICAM2Q86XR7 235 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 GOLGA6L1Q8N7Z2 621 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 ZNF384Q8TF68 577 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 LEMD3Q9Y2U8 911 aa12.76□□□□□ -0.37
CUX1-204ENST00000393824 LOC102724159A0A0B4J2E5 919 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 FANCGO15287 622 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 URI1O94763 535 aaPredicted RBP12.75□□□□□ -0.37
CUX1-204ENST00000393824 IVLP07476 585 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 GTF2A1P52655 376 aaPredicted RBP12.75□□□□□ -0.37
CUX1-204ENST00000393824 PWP2Q15269 919 aaKnown RBP12.75□□□□□ -0.37
CUX1-204ENST00000393824 FCHSD1Q86WN1 690 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 VPS37DQ86XT2 251 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 SMARCC2Q8TAQ2 1214 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 TMX1Q9H3N1 280 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 KCNQ5Q9NR82 932 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 IFNKQ9P0W0 207 aa12.75□□□□□ -0.37
CUX1-204ENST00000393824 H3BQV1 296 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 JAK2O60674 1132 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 RPS6KA5O75582 802 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 IDH1O75874 414 aaKnown RBP12.74□□□□□ -0.37
CUX1-204ENST00000393824 CAVIN4Q5BKX8 364 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 IFFO2Q5TF58 517 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 RSRC2Q7L4I2 434 aaKnown RBP12.74□□□□□ -0.37
CUX1-204ENST00000393824 OSBP2Q969R2 916 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 U3KPZ7 1027 aaPredicted RBP12.74□□□□□ -0.37
CUX1-204ENST00000393824 HMGB1P09429 215 aaKnown RBP12.74□□□□□ -0.37
CUX1-204ENST00000393824 MAP3K9P80192 1104 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 WASHC4Q2M389 1173 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 NOM1Q5C9Z4 860 aaKnown RBP12.74□□□□□ -0.37
CUX1-204ENST00000393824 JAKMIP3Q5VZ66 844 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 DPP8Q6V1X1 898 aaPredicted RBP12.74□□□□□ -0.37
CUX1-204ENST00000393824 ADGRA1Q86SQ6 560 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 TCEANC2Q96MN5 208 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 NEK1Q96PY6 1258 aa12.74□□□□□ -0.37
CUX1-204ENST00000393824 PUS7LQ9H0K6 701 aaKnown RBP12.74□□□□□ -0.37
CUX1-204ENST00000393824 KIF13BQ9NQT8 1826 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 A0A087WWV3 80 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 MAP2K7O14733 419 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 SMC2O95347 1197 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 UQCRFS1P1P0C7P4 283 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 DOK7Q18PE1 504 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 MSL3Q8N5Y2 521 aaKnown RBP12.73□□□□□ -0.37
CUX1-204ENST00000393824 TTLL6Q8N841 843 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 RABGGTAQ92696 567 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 CNKSR1Q969H4 720 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 DDX11Q96FC9 970 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 ZNF396Q96N95 335 aaPredicted RBP12.73□□□□□ -0.37
CUX1-204ENST00000393824 M0R2C6 588 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 ATP2B4P23634 1241 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 GUCY2CP25092 1073 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 PRDX5P30044 214 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 MAGEA9P43362 315 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 LMAN1P49257 510 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 GYS2P54840 703 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 STK3Q13188 491 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 FMR1NBQ8N0W7 255 aaPredicted RBP12.73□□□□□ -0.37
CUX1-204ENST00000393824 CD209Q9NNX6 404 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 ABCF2Q9UG63 623 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 TAF6LQ9Y6J9 622 aa12.73□□□□□ -0.37
CUX1-204ENST00000393824 CCDC151A5D8V7 595 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 FOXP2O15409 715 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms