RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 COL2A1P02458 1487 aaPredicted RBP14.69□□□□□ -0.06
VRK3-202ENST00000377011 UNCXA6NJT0 531 aa14.69□□□□□ -0.06
VRK3-202ENST00000377011 MBD4O95243 580 aa14.69□□□□□ -0.06
VRK3-202ENST00000377011 NOL9Q5SY16 702 aaKnown RBP14.69□□□□□ -0.06
VRK3-202ENST00000377011 ERO1BQ86YB8 467 aa14.69□□□□□ -0.06
VRK3-202ENST00000377011 OSBP2Q969R2 916 aa14.69□□□□□ -0.06
VRK3-202ENST00000377011 SEC62Q99442 399 aaKnown RBP14.69□□□□□ -0.06
VRK3-202ENST00000377011 NOL10Q9BSC4 688 aaKnown RBP14.69□□□□□ -0.06
VRK3-202ENST00000377011 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.69□□□□□ -0.06
VRK3-202ENST00000377011 PRDM10Q9NQV6 1147 aa14.69□□□□□ -0.06
VRK3-202ENST00000377011 PTPRFP10586 1907 aa14.68□□□□□ -0.06
VRK3-202ENST00000377011 CYP2D7A0A087X1C5 515 aa14.68□□□□□ -0.06
VRK3-202ENST00000377011 TESPA1A2RU30 521 aaPredicted RBP14.68□□□□□ -0.06
VRK3-202ENST00000377011 PTPRAP18433 802 aa14.68□□□□□ -0.06
VRK3-202ENST00000377011 ESYT1Q9BSJ8 1104 aa14.68□□□□□ -0.06
VRK3-202ENST00000377011 CCL15-CCL14A0A0B4J2E2 113 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 MANSC4A6NHS7 340 aaPredicted RBP14.67□□□□□ -0.06
VRK3-202ENST00000377011 TBC1D12O60347 775 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 PLCG2P16885 1265 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 USP5P45974 858 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 CCL15Q16663 113 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 SCYL3Q8IZE3 742 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 KBTBD3Q8NAB2 608 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 SAGE1Q9NXZ1 904 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 ZSWIM8A7E2V4 1837 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 TTC41PQ6P2S7 1318 aa14.67□□□□□ -0.06
VRK3-202ENST00000377011 M0R2C6 588 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 GDF11O95390 407 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 ZNF445P59923 1031 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 PPIL2Q13356 520 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 METTL16Q86W50 562 aaKnown RBP14.66□□□□□ -0.06
VRK3-202ENST00000377011 PANK2Q9BZ23 570 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 DCP1AQ9NPI6 582 aaPredicted RBP14.66□□□□□ -0.06
VRK3-202ENST00000377011 FOXD4L1Q9NU39 408 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 ZHX2Q9Y6X8 837 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 BTBD19C9JJ37 291 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 PPATQ06203 517 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 SREBF2Q12772 1141 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 CRHR2Q13324 411 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 UBE3CQ15386 1083 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 SLC44A5Q8NCS7 719 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 ZNF296Q8WUU4 475 aaPredicted RBP14.66□□□□□ -0.06
VRK3-202ENST00000377011 HOOK2Q96ED9 719 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 INTS4Q96HW7 963 aaKnown RBP14.66□□□□□ -0.06
VRK3-202ENST00000377011 PI4KBQ9UBF8 816 aa14.66□□□□□ -0.06
VRK3-202ENST00000377011 CA12O43570 354 aa14.65□□□□□ -0.06
VRK3-202ENST00000377011 CHMLP26374 656 aa14.65□□□□□ -0.06
VRK3-202ENST00000377011 CUL4AQ13619 759 aa14.65□□□□□ -0.06
VRK3-202ENST00000377011 DYNLL2Q96FJ2 89 aa14.65□□□□□ -0.06
VRK3-202ENST00000377011 KCNH4Q9UQ05 1017 aa14.65□□□□□ -0.06
VRK3-202ENST00000377011 AFG3L2Q9Y4W6 797 aa14.65□□□□□ -0.06
VRK3-202ENST00000377011 DDX49Q9Y6V7 483 aaKnown RBP14.65□□□□□ -0.06
VRK3-202ENST00000377011 CTNND1O60716 968 aaKnown RBP14.64□□□□□ -0.07
VRK3-202ENST00000377011 IGSF3O75054 1194 aa14.64□□□□□ -0.07
VRK3-202ENST00000377011 CAP2P40123 477 aa14.64□□□□□ -0.07
VRK3-202ENST00000377011 GPAT2Q6NUI2 795 aa14.64□□□□□ -0.07
VRK3-202ENST00000377011 TNS4Q8IZW8 715 aa14.64□□□□□ -0.07
VRK3-202ENST00000377011 TRIM75PA6NK02 468 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 GPR25O00155 361 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 RNF113AO15541 343 aaKnown RBP14.63□□□□□ -0.07
VRK3-202ENST00000377011 GLRX3O76003 335 aaKnown RBP14.63□□□□□ -0.07
VRK3-202ENST00000377011 SHMT1P34896 483 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 GTF2A2P52657 109 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 CCDC173Q0VFZ6 552 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 CCDC129Q6ZRS4 1044 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 REM2Q8IYK8 340 aaPredicted RBP14.63□□□□□ -0.07
VRK3-202ENST00000377011 GPATCH3Q96I76 525 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 STRBPQ96SI9 672 aaKnown RBP14.63□□□□□ -0.07
VRK3-202ENST00000377011 DHX36Q9H2U1 1008 aaKnown RBP14.63□□□□□ -0.07
VRK3-202ENST00000377011 MCM9Q9NXL9 1143 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 FOXP2O15409 715 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 ECM2O94769 699 aaPredicted RBP14.63□□□□□ -0.07
VRK3-202ENST00000377011 GABPAQ06546 454 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 GAS2L3Q86XJ1 694 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 CRNKL1Q9BZJ0 848 aaKnown RBP14.63□□□□□ -0.07
VRK3-202ENST00000377011 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.63□□□□□ -0.072e-7■■■□□ 18.9
VRK3-202ENST00000377011 EPB41L4AQ9HCS5 686 aaPredicted RBP14.63□□□□□ -0.07
VRK3-202ENST00000377011 LMBRD1Q9NUN5 540 aa14.63□□□□□ -0.07
VRK3-202ENST00000377011 GUCY1A2P33402 732 aa14.62□□□□□ -0.07
VRK3-202ENST00000377011 SNAPC2Q13487 334 aa14.62□□□□□ -0.07
VRK3-202ENST00000377011 FOXP4Q8IVH2 680 aaPredicted RBP14.62□□□□□ -0.07
VRK3-202ENST00000377011 PPP1R9BQ96SB3 815 aa14.62□□□□□ -0.07
VRK3-202ENST00000377011 FSD1Q9BTV5 496 aa14.62□□□□□ -0.07
VRK3-202ENST00000377011 CFHR5Q9BXR6 569 aa14.62□□□□□ -0.07
VRK3-202ENST00000377011 PICK1Q9NRD5 415 aa14.62□□□□□ -0.07
VRK3-202ENST00000377011 HERC5Q9UII4 1024 aaKnown RBP14.62□□□□□ -0.07
VRK3-202ENST00000377011 SLC4A4Q9Y6R1 1079 aa14.62□□□□□ -0.07
VRK3-202ENST00000377011 GSG1L2A8MUP6 293 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 CETPP11597 493 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 INHBEP58166 350 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 SPP2Q13103 211 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 TREML2Q5T2D2 321 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 MCTP1Q6DN14 999 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 TATDN1Q6P1N9 297 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 STK11IPQ8N1F8 1099 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 CRACR2BQ8N4Y2 399 aaPredicted RBP14.61□□□□□ -0.07
VRK3-202ENST00000377011 APPBP2Q92624 585 aa14.61□□□□□ -0.07
VRK3-202ENST00000377011 ANP32BQ92688 251 aaKnown RBP14.61□□□□□ -0.07
VRK3-202ENST00000377011 A0A0G2JLL6 359 aaPredicted RBP14.61□□□□□ -0.07
VRK3-202ENST00000377011 USP17L12C9JPN9 530 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms