RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 MAPKAPK5Q8IW41 473 aa17.32■□□□□ 0.36
PTCH1-202ENST00000375271 TDHQ8IZJ6 230 aa17.32■□□□□ 0.36
PTCH1-202ENST00000375271 FEZ1Q99689 392 aa17.32■□□□□ 0.36
PTCH1-202ENST00000375271 GDF15Q99988 308 aa17.32■□□□□ 0.36
PTCH1-202ENST00000375271 WDR18Q9BV38 432 aa17.32■□□□□ 0.36
PTCH1-202ENST00000375271 GINM1Q9NU53 330 aa17.32■□□□□ 0.36
PTCH1-202ENST00000375271 ALPK3Q96L96 1907 aa17.31■□□□□ 0.36
PTCH1-202ENST00000375271 XRCC5P13010 732 aaKnown RBP17.31■□□□□ 0.36
PTCH1-202ENST00000375271 MAGEA10P43363 369 aaPredicted RBP17.31■□□□□ 0.36
PTCH1-202ENST00000375271 MTX1Q13505 466 aa17.31■□□□□ 0.36
PTCH1-202ENST00000375271 TGFBRAP1Q8WUH2 860 aa17.31■□□□□ 0.36
PTCH1-202ENST00000375271 GJD2Q9UKL4 321 aa17.31■□□□□ 0.36
PTCH1-202ENST00000375271 OGDHLQ9ULD0 1010 aa17.31■□□□□ 0.36
PTCH1-202ENST00000375271 MAST2Q6P0Q8 1798 aa17.3■□□□□ 0.36
PTCH1-202ENST00000375271 GDF11O95390 407 aa17.3■□□□□ 0.36
PTCH1-202ENST00000375271 HOXA7P31268 230 aaPredicted RBP17.3■□□□□ 0.36
PTCH1-202ENST00000375271 MCAMP43121 646 aa17.3■□□□□ 0.36
PTCH1-202ENST00000375271 CCNA1P78396 465 aa17.3■□□□□ 0.36
PTCH1-202ENST00000375271 FOXP4Q8IVH2 680 aaPredicted RBP17.3■□□□□ 0.36
PTCH1-202ENST00000375271 ZNF384Q8TF68 577 aa17.3■□□□□ 0.36
PTCH1-202ENST00000375271 ARHGAP45Q92619 1136 aa17.3■□□□□ 0.36
PTCH1-202ENST00000375271 P2RX7Q99572 595 aaKnown RBP17.3■□□□□ 0.36
PTCH1-202ENST00000375271 APBA2Q99767 749 aa17.3■□□□□ 0.36
PTCH1-202ENST00000375271 FLT1P17948 1338 aa17.29■□□□□ 0.36
PTCH1-202ENST00000375271 ERVK-9P63128 1117 aa17.29■□□□□ 0.36
PTCH1-202ENST00000375271 ERVK-24P63145 666 aa17.29■□□□□ 0.36
PTCH1-202ENST00000375271 USP17L2Q6R6M4 530 aa17.29■□□□□ 0.36
PTCH1-202ENST00000375271 PLEKHH3Q7Z736 793 aa17.29■□□□□ 0.36
PTCH1-202ENST00000375271 FRAT1Q92837 279 aaPredicted RBP17.29■□□□□ 0.36
PTCH1-202ENST00000375271 SNRKQ9NRH2 765 aa17.29■□□□□ 0.36
PTCH1-202ENST00000375271 ZBTB21Q9ULJ3 1066 aa17.29■□□□□ 0.36
PTCH1-202ENST00000375271 IVNS1ABPQ9Y6Y0 642 aa17.29■□□□□ 0.36
PTCH1-202ENST00000375271 MNX1P50219 401 aaPredicted RBP17.28■□□□□ 0.36
PTCH1-202ENST00000375271 RARSP54136 660 aaKnown RBP17.28■□□□□ 0.36
PTCH1-202ENST00000375271 LRIT3Q3SXY7 679 aa17.28■□□□□ 0.36
PTCH1-202ENST00000375271 MFSD14CQ5VZR4 134 aa17.28■□□□□ 0.36
PTCH1-202ENST00000375271 LBHD1Q9BQE6 289 aaPredicted RBP17.28■□□□□ 0.36
PTCH1-202ENST00000375271 PRKAG2Q9UGJ0 569 aa17.28■□□□□ 0.36
PTCH1-202ENST00000375271 SAP30BPQ9UHR5 308 aaKnown RBP17.28■□□□□ 0.36
PTCH1-202ENST00000375271 LAMA3Q16787 3333 aa17.28■□□□□ 0.36
PTCH1-202ENST00000375271 USP5P45974 858 aa17.27■□□□□ 0.36
PTCH1-202ENST00000375271 RRP1BQ14684 758 aaKnown RBP17.27■□□□□ 0.36
PTCH1-202ENST00000375271 ZYXQ15942 572 aaKnown RBP17.27■□□□□ 0.36
PTCH1-202ENST00000375271 MAP3K21Q5TCX8 1036 aa17.27■□□□□ 0.36
PTCH1-202ENST00000375271 GPR142Q7Z601 462 aa17.27■□□□□ 0.36
PTCH1-202ENST00000375271 PALD1Q9ULE6 856 aa17.27■□□□□ 0.36
PTCH1-202ENST00000375271 CNGA1P29973 690 aa17.26■□□□□ 0.35
PTCH1-202ENST00000375271 USP14P54578 494 aa17.26■□□□□ 0.35
PTCH1-202ENST00000375271 CACNB2Q08289 660 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-202ENST00000375271 CERS3Q8IU89 383 aa17.26■□□□□ 0.35
PTCH1-202ENST00000375271 TXNRD2Q9NNW7 524 aa17.26■□□□□ 0.35
PTCH1-202ENST00000375271 STXBP5LQ9Y2K9 1186 aa17.26■□□□□ 0.35
PTCH1-202ENST00000375271 COL6A3P12111 3177 aa17.26■□□□□ 0.35
PTCH1-202ENST00000375271 IGSF3O75054 1194 aa17.25■□□□□ 0.35
PTCH1-202ENST00000375271 PPP4CP60510 307 aa17.25■□□□□ 0.35
PTCH1-202ENST00000375271 Q7L0L9 218 aa17.25■□□□□ 0.35
PTCH1-202ENST00000375271 TRMT2AQ8IZ69 625 aaKnown RBP17.25■□□□□ 0.35
PTCH1-202ENST00000375271 PLXNB2O15031 1838 aa17.25■□□□□ 0.35
PTCH1-202ENST00000375271 PFASO15067 1338 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 PNMA6EA0A0J9YXQ4 647 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L15C9J2P7 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L13C9JLJ4 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L11C9JVI0 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L18D6R9N7 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L22D6RA61 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L17D6RBQ6 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L19D6RCP7 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L20D6RJB6 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 MSCO60682 206 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 IDH1O75874 414 aaKnown RBP17.24■□□□□ 0.35
PTCH1-202ENST00000375271 GH2P01242 217 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 CCND3P30281 292 aaPredicted RBP17.24■□□□□ 0.35
PTCH1-202ENST00000375271 MDM2Q00987 491 aaPredicted RBP17.24■□□□□ 0.35
PTCH1-202ENST00000375271 USP17L24Q0WX57 530 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 MAP2K5Q13163 448 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 RAB3GAP1Q15042 981 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 TNNI3KQ59H18 835 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 CLUAP1Q96AJ1 413 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 EDC3Q96F86 508 aaKnown RBP17.24■□□□□ 0.35
PTCH1-202ENST00000375271 PORCNQ9H237 461 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 CABP5Q9NP86 173 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 GPR108Q9NPR9 543 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 RBPJLQ9UBG7 517 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 RABGAP1Q9Y3P9 1069 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 FPGT-TNNI3KV9GXZ4 949 aa17.24■□□□□ 0.35
PTCH1-202ENST00000375271 PEX10O60683 326 aa17.23■□□□□ 0.35
PTCH1-202ENST00000375271 CYP7A1P22680 504 aa17.23■□□□□ 0.35
PTCH1-202ENST00000375271 ATP2B2Q01814 1243 aa17.23■□□□□ 0.35
PTCH1-202ENST00000375271 CCL14Q16627 93 aa17.23■□□□□ 0.35
PTCH1-202ENST00000375271 DBNDD2Q9BQY9 259 aa17.23■□□□□ 0.35
PTCH1-202ENST00000375271 SENP6Q9GZR1 1112 aaPredicted RBP17.23■□□□□ 0.35
PTCH1-202ENST00000375271 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.23■□□□□ 0.35
PTCH1-202ENST00000375271 SIPA1L1O43166 1804 aa17.22■□□□□ 0.35
PTCH1-202ENST00000375271 FOCADQ5VW36 1801 aa17.22■□□□□ 0.35
PTCH1-202ENST00000375271 SURF6O75683 361 aaKnown RBP17.22■□□□□ 0.35
PTCH1-202ENST00000375271 TRIM27P14373 513 aa17.22■□□□□ 0.35
PTCH1-202ENST00000375271 ZAP70P43403 619 aa17.22■□□□□ 0.35
PTCH1-202ENST00000375271 Q3C1V9 767 aa17.22■□□□□ 0.35
PTCH1-202ENST00000375271 TTC6Q86TZ1 520 aa17.22■□□□□ 0.35
PTCH1-202ENST00000375271 DNAJC18Q9H819 358 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms