RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 MTUS1Q9ULD2 1270 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 ELP1O95163 1332 aa17.39■□□□□ 0.37
PTPRF-201ENST00000359947 EXOC3O60645 756 aa17.38■□□□□ 0.37
PTPRF-201ENST00000359947 UBLCP1Q8WVY7 318 aaPredicted RBP17.38■□□□□ 0.37
PTPRF-201ENST00000359947 PNMA6EA0A0J9YXQ4 647 aa17.38■□□□□ 0.37
PTPRF-201ENST00000359947 BEND3Q5T5X7 828 aa17.38■□□□□ 0.37
PTPRF-201ENST00000359947 KCNQ3O43525 872 aa17.38■□□□□ 0.37
PTPRF-201ENST00000359947 NONOQ15233 471 aaKnown RBP eCLIP17.38■□□□□ 0.37
PTPRF-201ENST00000359947 SUGCTQ9HAC7 445 aa17.38■□□□□ 0.37
PTPRF-201ENST00000359947 PAXBP1Q9Y5B6 917 aa17.38■□□□□ 0.37
PTPRF-201ENST00000359947 CCDC122Q5T0U0 273 aa17.38■□□□□ 0.37
PTPRF-201ENST00000359947 EDC3Q96F86 508 aaKnown RBP17.38■□□□□ 0.37
PTPRF-201ENST00000359947 POLR3AO14802 1390 aaPredicted RBP17.38■□□□□ 0.37
PTPRF-201ENST00000359947 GAS7O60861 476 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 TTLL7Q6ZT98 887 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 DIS3L2Q8IYB7 885 aaKnown RBP17.37■□□□□ 0.37
PTPRF-201ENST00000359947 RIOK1Q9BRS2 568 aaKnown RBP17.37■□□□□ 0.37
PTPRF-201ENST00000359947 RILPL1Q5EBL4 403 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 DCUN1D2Q6PH85 259 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 CSGALNACT2Q8N6G5 542 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 TSPOAP1O95153 1857 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 EIF2AK4Q9P2K8 1649 aaKnown RBP17.37■□□□□ 0.37
PTPRF-201ENST00000359947 ZNF710Q8N1W2 664 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 FLOT1O75955 427 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 LIN9Q5TKA1 542 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 CTTNBP2Q8WZ74 1663 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 USP17L12C9JPN9 530 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 USP17L21D6R901 530 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 CERKLQ49MI3 558 aaPredicted RBP17.37■□□□□ 0.37
PTPRF-201ENST00000359947 CARD10Q9BWT7 1032 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 NBPF3Q9H094 633 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 ST7Q9NRC1 585 aa17.37■□□□□ 0.37
PTPRF-201ENST00000359947 RRP9O43818 475 aaKnown RBP17.36■□□□□ 0.37
PTPRF-201ENST00000359947 CALCOCO2Q13137 446 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 FAM193BQ96PV7 902 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-201ENST00000359947 ABT1Q9ULW3 272 aaKnown RBP17.36■□□□□ 0.37
PTPRF-201ENST00000359947 GOLGA8HP0CJ92 632 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 YARSP54577 528 aaKnown RBP17.36■□□□□ 0.37
PTPRF-201ENST00000359947 ASIC2Q16515 512 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 JAKMIP2Q96AA8 810 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 TIGD1Q96MW7 591 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 NOX5Q96PH1 765 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 NSRP1Q9H0G5 558 aaKnown RBP17.36■□□□□ 0.37
PTPRF-201ENST00000359947 KCNH3Q9ULD8 1083 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 RAD50Q92878 1312 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 BLZF1Q9H2G9 400 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 ANO1Q5XXA6 986 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 MIER3Q7Z3K6 550 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 TRPC5Q9UL62 973 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-201ENST00000359947 CETN3O15182 167 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 FAM173BQ6P4H8 233 aa17.36■□□□□ 0.37
PTPRF-201ENST00000359947 THRAP3Q9Y2W1 955 aaKnown RBP17.36■□□□□ 0.37
PTPRF-201ENST00000359947 COL17A1Q9UMD9 1497 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-201ENST00000359947 SMCO2A6NFE2 343 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 DPP9Q86TI2 863 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 HACE1Q8IYU2 909 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 SPICE1Q8N0Z3 855 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 PTPRKQ15262 1439 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 DEPTORQ8TB45 409 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 SMC6Q96SB8 1091 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 ARFGAP3Q9NP61 516 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 BMS1Q14692 1282 aaKnown RBP17.35■□□□□ 0.37
PTPRF-201ENST00000359947 ARHGAP44Q17R89 818 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 FLAD1Q8NFF5 587 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 MMS19Q96T76 1030 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 PRR16Q569H4 304 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 CASC4Q6P4E1 433 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 CERS3Q8IU89 383 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 CHURC1Q8WUH1 139 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 APOL6Q9BWW8 343 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 USP26Q9BXU7 913 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 MYO1AQ9UBC5 1043 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 UGGT2Q9NYU1 1516 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 PPARAQ07869 468 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 GLT8D2Q9H1C3 349 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 ZBTB7BO15156 539 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-201ENST00000359947 DCAF15Q66K64 600 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 TRIM7Q9C029 511 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 TPD52P55327 224 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-201ENST00000359947 CCDC125Q86Z20 511 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 NSMCE1Q8WV22 266 aa17.35■□□□□ 0.37
PTPRF-201ENST00000359947 MTRF1LQ9UGC7 380 aaKnown RBP17.35■□□□□ 0.37
PTPRF-201ENST00000359947 ATP10AO60312 1499 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 ERVV-2B6SEH9 535 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 ZEB2O60315 1214 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 LONRF3Q496Y0 759 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 OTUD6AQ7L8S5 288 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 GSDMBQ8TAX9 411 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 IBTKQ9P2D0 1353 aaPredicted RBP17.34■□□□□ 0.37
PTPRF-201ENST00000359947 BSPRYQ5W0U4 402 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 REXO1Q8N1G1 1221 aaKnown RBP17.34■□□□□ 0.37
PTPRF-201ENST00000359947 GNPTABQ3T906 1256 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 STMN4Q9H169 189 aaPredicted RBP17.34■□□□□ 0.37
PTPRF-201ENST00000359947 EDC4Q6P2E9 1401 aaKnown RBP17.34■□□□□ 0.37
PTPRF-201ENST00000359947 NEURL1BA8MQ27 555 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 BTDP43251 543 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 KBTBD3Q8NAB2 608 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 TBC1D31Q96DN5 1066 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 TRIM31Q9BZY9 425 aa17.34■□□□□ 0.37
PTPRF-201ENST00000359947 AKR1B15C9JRZ8 316 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms