RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CCDC27Q2M243 656 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 ERICH6BQ5W0A0 696 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 SETDB2Q96T68 719 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 ZNF521Q96K83 1311 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 COL4A5P29400 1685 aa9□□□□□ -0.97
VPS13A-201ENST00000355766 HEG1Q9ULI3 1381 aa9□□□□□ -0.97
VPS13A-201ENST00000355766 LMOD1P29536 600 aaPredicted RBP9□□□□□ -0.97
VPS13A-201ENST00000355766 IL6STP40189 918 aaPredicted RBP9□□□□□ -0.97
VPS13A-201ENST00000355766 CST9Q5W186 159 aa9□□□□□ -0.97
VPS13A-201ENST00000355766 RTKN2Q8IZC4 609 aa9□□□□□ -0.97
VPS13A-201ENST00000355766 TTC5Q8N0Z6 440 aa9□□□□□ -0.97
VPS13A-201ENST00000355766 OGFOD1Q8N543 542 aa9□□□□□ -0.97
VPS13A-201ENST00000355766 TSPAN10Q9H1Z9 355 aaPredicted RBP9□□□□□ -0.97
VPS13A-201ENST00000355766 NEUROD4Q9HD90 331 aa9□□□□□ -0.97
VPS13A-201ENST00000355766 GPC6Q9Y625 555 aaPredicted RBP9□□□□□ -0.97
VPS13A-201ENST00000355766 KLRG2A4D1S0 409 aaPredicted RBP8.99□□□□□ -0.97
VPS13A-201ENST00000355766 C1QTNF9BB2RNN3 333 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 TRAF5O00463 557 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 IL13P35225 146 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 SFSWAPQ12872 951 aaKnown RBP8.99□□□□□ -0.97
VPS13A-201ENST00000355766 OLFM4Q6UX06 510 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 SYT9Q86SS6 491 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 SAPCD2Q86UD0 394 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 LARGE2Q8N3Y3 721 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 RHPN1Q8TCX5 695 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 RUNDC1Q96C34 613 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 PSMD1Q99460 953 aa8.99□□□□□ -0.97
VPS13A-201ENST00000355766 NOP53Q9NZM5 478 aaKnown RBP8.99□□□□□ -0.97
VPS13A-201ENST00000355766 PALM3A6NDB9 673 aaPredicted RBP8.98□□□□□ -0.97
VPS13A-201ENST00000355766 EIF6P56537 245 aaKnown RBP8.98□□□□□ -0.97
VPS13A-201ENST00000355766 SOX10P56693 466 aa8.98□□□□□ -0.97
VPS13A-201ENST00000355766 PSMA6P60900 246 aaKnown RBP8.98□□□□□ -0.97
VPS13A-201ENST00000355766 CNGB1Q14028 1251 aaPredicted RBP8.98□□□□□ -0.97
VPS13A-201ENST00000355766 USP50Q70EL3 339 aaPredicted RBP8.98□□□□□ -0.97
VPS13A-201ENST00000355766 CD163Q86VB7 1156 aa8.98□□□□□ -0.97
VPS13A-201ENST00000355766 NBPF5PQ86XG9 351 aaPredicted RBP8.98□□□□□ -0.97
VPS13A-201ENST00000355766 SYNE4Q8N205 404 aa8.98□□□□□ -0.97
VPS13A-201ENST00000355766 JDP2Q8WYK2 163 aa8.98□□□□□ -0.97
VPS13A-201ENST00000355766 TRIM11Q96F44 468 aa8.98□□□□□ -0.97
VPS13A-201ENST00000355766 ZNF496Q96IT1 587 aaPredicted RBP8.98□□□□□ -0.97
VPS13A-201ENST00000355766 HHIPL1Q96JK4 782 aa8.98□□□□□ -0.97
VPS13A-201ENST00000355766 MDFIQ99750 246 aa8.98□□□□□ -0.97
VPS13A-201ENST00000355766 HCN4Q9Y3Q4 1203 aa8.98□□□□□ -0.97
VPS13A-201ENST00000355766 ELOA3CA0A087WX78 387 aaPredicted RBP8.97□□□□□ -0.97
VPS13A-201ENST00000355766 ELOA3DA6NLF2 546 aaPredicted RBP8.97□□□□□ -0.97
VPS13A-201ENST00000355766 SFI1A8K8P3 1242 aa8.97□□□□□ -0.97
VPS13A-201ENST00000355766 DIAPH1O60610 1272 aaKnown RBP8.97□□□□□ -0.97
VPS13A-201ENST00000355766 DKK1O94907 266 aa8.97□□□□□ -0.97
VPS13A-201ENST00000355766 NEFLP07196 543 aa8.97□□□□□ -0.97
VPS13A-201ENST00000355766 EPS15P42566 896 aa8.97□□□□□ -0.97
VPS13A-201ENST00000355766 ELOA3BQ3SY89 546 aa8.97□□□□□ -0.97
VPS13A-201ENST00000355766 C1orf53Q5VUE5 145 aa8.97□□□□□ -0.97
VPS13A-201ENST00000355766 NPM2Q86SE8 214 aaKnown RBP8.97□□□□□ -0.97
VPS13A-201ENST00000355766 ELOA3Q8NG57 546 aa8.97□□□□□ -0.97
VPS13A-201ENST00000355766 SLC30A3Q99726 388 aa8.97□□□□□ -0.97
VPS13A-201ENST00000355766 TEX13AQ9BXU3 409 aaPredicted RBP8.97□□□□□ -0.97
VPS13A-201ENST00000355766 TRPM7Q96QT4 1865 aa8.96□□□□□ -0.97
VPS13A-201ENST00000355766 PDE4DIPQ5VU43 2346 aa8.96□□□□□ -0.97
VPS13A-201ENST00000355766 K7ELQ4 463 aaPredicted RBP8.96□□□□□ -0.98
VPS13A-201ENST00000355766 M0R2N6 131 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 CELF2O95319 508 aaKnown RBP8.96□□□□□ -0.98
VPS13A-201ENST00000355766 FURINP09958 794 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 CHRNA4P43681 627 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 HIRAP54198 1017 aaPredicted RBP8.96□□□□□ -0.98
VPS13A-201ENST00000355766 MTHFSDQ2M296 383 aaKnown RBP8.96□□□□□ -0.98
VPS13A-201ENST00000355766 CIAPIN1Q6FI81 312 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 ZNF790Q6PG37 636 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 SIX5Q8N196 739 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 TSEN2Q8NCE0 465 aaKnown RBP8.96□□□□□ -0.98
VPS13A-201ENST00000355766 ZNF594Q96JF6 807 aaPredicted RBP8.96□□□□□ -0.98
VPS13A-201ENST00000355766 HSH2DQ96JZ2 352 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 PHACTR1Q9C0D0 580 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 GTF3C3Q9Y5Q9 886 aa8.96□□□□□ -0.98
VPS13A-201ENST00000355766 E9PSI1 815 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 SIN3BO75182 1162 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 A1BGP04217 495 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 ALAS2P22557 587 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 ALDH1B1P30837 517 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 NOGQ13253 232 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 CLEC4GQ6UXB4 293 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 CLUAP1Q96AJ1 413 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 PLVAPQ9BX97 442 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 ADARB2Q9NS39 739 aaKnown RBP8.95□□□□□ -0.98
VPS13A-201ENST00000355766 ZNF652Q9Y2D9 606 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 IL16Q14005 1332 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 RIC1Q4ADV7 1423 aa8.95□□□□□ -0.98
VPS13A-201ENST00000355766 ADARB2-AS1A8MUL3 147 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 NEFMP07197 916 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 HMOX1P09601 288 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 U2AF1L5P0DN76 240 aaPredicted RBP8.94□□□□□ -0.98
VPS13A-201ENST00000355766 U2AF1Q01081 240 aaKnown RBP eCLIP8.94□□□□□ -0.98
VPS13A-201ENST00000355766 TEFQ10587 303 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 WDR63Q8IWG1 891 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 ZNF280CQ8ND82 737 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 FMNL2Q96PY5 1086 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 GLIS2Q9BZE0 524 aaPredicted RBP8.94□□□□□ -0.98
VPS13A-201ENST00000355766 SAGE1Q9NXZ1 904 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 GPRC5DQ9NZD1 345 aa8.94□□□□□ -0.98
VPS13A-201ENST00000355766 TFIP11Q9UBB9 837 aaKnown RBP8.94□□□□□ -0.98
VPS13A-201ENST00000355766 CHMP3Q9Y3E7 222 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms