RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 FGRP09769 529 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 CDK5RAP2Q96SN8 1893 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 TNKSO95271 1327 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 SBF1O95248 1867 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 MYH1P12882 1939 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 GOLGA8BA8MQT2 603 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 NPM3O75607 178 aaKnown RBP11.76□□□□□ -0.53
HMGB3-201ENST00000325307 SYNE3Q6ZMZ3 975 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 ZSCAN10Q96SZ4 725 aaPredicted RBP11.76□□□□□ -0.53
HMGB3-201ENST00000325307 FAM196BA6NMK8 535 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 RASA1P20936 1047 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 TNNI2P48788 182 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 CCT2P78371 535 aaKnown RBP11.76□□□□□ -0.53
HMGB3-201ENST00000325307 IGDCC4Q8TDY8 1250 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 ZBED3Q96IU2 234 aaPredicted RBP11.76□□□□□ -0.53
HMGB3-201ENST00000325307 AGXT2Q9BYV1 514 aa11.76□□□□□ -0.53
HMGB3-201ENST00000325307 LAMB1P07942 1786 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 NMT2O60551 498 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 SH3BP5LQ7L8J4 393 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 FAM151AQ8WW52 585 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 TMEM39BQ9GZU3 492 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 LY9Q9HBG7 655 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 SENP2Q9HC62 589 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 SWAP70Q9UH65 585 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 SLC12A7Q9Y666 1083 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 SLURP2P0DP57 97 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 TNFAIP1Q13829 316 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 IFIT1BQ5T764 474 aaKnown RBP11.75□□□□□ -0.53
HMGB3-201ENST00000325307 TRPM4Q8TD43 1214 aa11.75□□□□□ -0.53
HMGB3-201ENST00000325307 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.75□□□□□ -0.53
HMGB3-201ENST00000325307 DICER1Q9UPY3 1922 aaKnown RBP11.75□□□□□ -0.53
HMGB3-201ENST00000325307 MPHOSPH10O00566 681 aaKnown RBP11.74□□□□□ -0.53
HMGB3-201ENST00000325307 DTNBO60941 627 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 CUL4AQ13619 759 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 MICU3Q86XE3 530 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 HACL1Q9UJ83 578 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 ASTN2O75129 1339 aaPredicted RBP11.74□□□□□ -0.53
HMGB3-201ENST00000325307 PDIA3P30101 505 aaKnown RBP11.74□□□□□ -0.53
HMGB3-201ENST00000325307 FKBP1CQ5VVH2 108 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 TMTC2Q8N394 836 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 FBXL16Q8N461 479 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 ENAHQ8N8S7 591 aaPredicted RBP11.74□□□□□ -0.53
HMGB3-201ENST00000325307 MYL10Q9BUA6 226 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 SMC3Q9UQE7 1217 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 ECM29Q5VYK3 1845 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 DCAF8L1A6NGE4 600 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 RXRAP19793 462 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 LIFRP42702 1097 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 RASA3Q14644 834 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 FOXP4Q8IVH2 680 aaPredicted RBP11.74□□□□□ -0.53
HMGB3-201ENST00000325307 CCDC144CPQ8IYA2 1237 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 NUP133Q8WUM0 1156 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 ZNF274Q96GC6 653 aaPredicted RBP11.74□□□□□ -0.53
HMGB3-201ENST00000325307 EHD4Q9H223 541 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 NCOA5Q9HCD5 579 aaKnown RBP11.74□□□□□ -0.53
HMGB3-201ENST00000325307 STX8Q9UNK0 236 aa11.74□□□□□ -0.53
HMGB3-201ENST00000325307 GABPAQ06546 454 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 ANGEL2Q5VTE6 544 aaKnown RBP11.73□□□□□ -0.53
HMGB3-201ENST00000325307 FAM83AQ86UY5 434 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 GTF3C6Q969F1 213 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 INTS4Q96HW7 963 aaKnown RBP11.73□□□□□ -0.53
HMGB3-201ENST00000325307 FOCADQ5VW36 1801 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 ZBTB43O43298 467 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 RAB3GAP1Q15042 981 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 APOA5Q6Q788 366 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 MTA3Q9BTC8 594 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 CNTNAP1P78357 1384 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 CPLX1O14810 134 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 PFKFB2O60825 505 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 NT5C2P49902 561 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 METAP2P50579 478 aaKnown RBP eCLIP11.73□□□□□ -0.53
HMGB3-201ENST00000325307 SCRN1Q12765 414 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.73□□□□□ -0.53
HMGB3-201ENST00000325307 GGA3Q9NZ52 723 aa11.73□□□□□ -0.53
HMGB3-201ENST00000325307 DDX60LQ5H9U9 1706 aaKnown RBP11.73□□□□□ -0.53
HMGB3-201ENST00000325307 GOLGA8AA7E2F4 631 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 MCM4P33991 863 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 SHMT1P34896 483 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 CATIPQ7Z7H3 387 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 SGMS1Q86VZ5 419 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 ADARB2Q9NS39 739 aaKnown RBP11.72□□□□□ -0.53
HMGB3-201ENST00000325307 MTMR7Q9Y216 660 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 ATRNL1Q5VV63 1379 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 AKR1B1P15121 316 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 SEC23AQ15436 765 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 CERKLQ49MI3 558 aaPredicted RBP11.72□□□□□ -0.53
HMGB3-201ENST00000325307 CCDC178Q5BJE1 867 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 MIGA2Q7L4E1 593 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 KAT14Q9H8E8 782 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 CWC22Q9HCG8 908 aaKnown RBP11.72□□□□□ -0.53
HMGB3-201ENST00000325307 PPFIA3O75145 1194 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 CDAN1Q8IWY9 1227 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 ZNF654Q8IZM8 581 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 NEDD1Q8NHV4 660 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 TNPO1Q92973 898 aaKnown RBP11.72□□□□□ -0.53
HMGB3-201ENST00000325307 CHMP4CQ96CF2 233 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 DEFB129Q9H1M3 183 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 DNAJC18Q9H819 358 aa11.72□□□□□ -0.53
HMGB3-201ENST00000325307 DHX16O60231 1041 aaKnown RBP11.71□□□□□ -0.53
HMGB3-201ENST00000325307 EVCP57679 992 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms