RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 RMDN2Q96LZ7 410 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 NAPGQ99747 312 aaPredicted RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 RABEP2Q9H5N1 569 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 GEMIN8Q9NWZ8 242 aaKnown RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 ITIH6Q6UXX5 1313 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 SPECC1L-ADORA2AF8WAN1 911 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 CIB2O75838 187 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 TRAPPC10P48553 1259 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 FMR1NBQ8N0W7 255 aaPredicted RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 MSANTD4Q8NCY6 345 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 IFNKQ9P0W0 207 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 ZMYM6O95789 1325 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 TMED1Q13445 227 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 PPP2R5EQ16537 467 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 Q6ZUG5 572 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 NUF2Q9BZD4 464 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 CETN3O15182 167 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 HOXC9P31274 260 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 NEDD9Q14511 834 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 KLHL10Q6JEL2 608 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 CCDC12Q8WUD4 166 aaPredicted RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 NUP88Q99567 741 aaPredicted RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 C19orf44Q9H6X5 657 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 FBXO2Q9UK22 296 aaPredicted RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 ODF2LQ9ULJ1 636 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 DYTNA2CJ06 578 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 HGSO14964 777 aaPredicted RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 EIF2S2P20042 333 aaKnown RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 PPP2R5AQ15172 486 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 CCDC57Q2TAC2 916 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 CCDC93Q567U6 631 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 G2E3Q7L622 706 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 CACNA2D4Q7Z3S7 1137 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 IQCGQ9H095 443 aaKnown RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 SPATS2LQ9NUQ6 558 aaKnown RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 PPP2R2CQ9Y2T4 447 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 IARSP41252 1262 aaKnown RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 GLE1Q53GS7 698 aaKnown RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 ICE2Q659A1 982 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 SMC1BQ8NDV3 1235 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 METTL22Q9BUU2 404 aaPredicted RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 XPO4Q9C0E2 1151 aaKnown RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 RAB21Q9UL25 225 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 ATXN2Q99700 1313 aaKnown RBP7.16□□□□□ -1.26
VPS35-201ENST00000299138 NBPF14Q5TI25 921 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 KNDC1Q76NI1 1749 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 GOLGA8KD6RF30 607 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 WDR93Q6P2C0 686 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 CYP26C1Q6V0L0 522 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 ALS2CR12Q96Q35 445 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 EDEM3Q9BZQ6 932 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 GGA2Q9UJY4 613 aa7.16□□□□□ -1.26
VPS35-201ENST00000299138 RTL9Q8NET4 1388 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 ITSN1Q15811 1721 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 SNRPA1P09661 255 aaKnown RBP7.15□□□□□ -1.26
VPS35-201ENST00000299138 LTKP29376 864 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 OAS2P29728 719 aaKnown RBP7.15□□□□□ -1.26
VPS35-201ENST00000299138 ATP6V1AP38606 617 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 PPARDQ03181 441 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 GJC2Q5T442 439 aaPredicted RBP7.15□□□□□ -1.26
VPS35-201ENST00000299138 NEUROD6Q96NK8 337 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 WWC3Q9ULE0 1092 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 METP08581 1390 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 ZNF202O95125 648 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 CCDC38Q502W7 563 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 TNNI3KQ59H18 835 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 MOV10L1Q9BXT6 1211 aaKnown RBP7.15□□□□□ -1.26
VPS35-201ENST00000299138 TFIP11Q9UBB9 837 aaKnown RBP7.15□□□□□ -1.26
VPS35-201ENST00000299138 FPGT-TNNI3KV9GXZ4 949 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 POTEJP0CG39 1038 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 MX2P20592 715 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 CA8P35219 290 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 LIFRP42702 1097 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 APOBRQ0VD83 1088 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 TSNAXIP1Q2TAA8 658 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 ZMYM1Q5SVZ6 1142 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 MMS22LQ6ZRQ5 1243 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 KLHDC4Q8TBB5 520 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 USP16Q9Y5T5 823 aa7.15□□□□□ -1.26
VPS35-201ENST00000299138 MAP4K4O95819 1239 aaPredicted RBP7.15□□□□□ -1.27
VPS35-201ENST00000299138 TATP17735 454 aaPredicted RBP7.15□□□□□ -1.27
VPS35-201ENST00000299138 PRKG1Q13976 671 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 TDRD12Q587J7 1177 aaKnown RBP7.15□□□□□ -1.27
VPS35-201ENST00000299138 ZNF662Q6ZS27 426 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 CUEDC2Q9H467 287 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 ORC2Q13416 577 aaPredicted RBP7.15□□□□□ -1.27
VPS35-201ENST00000299138 NNTQ13423 1086 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 LONRF2Q1L5Z9 754 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 INF2Q27J81 1249 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 CCDC144CPQ8IYA2 1237 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 C1orf131Q8NDD1 294 aaKnown RBP7.15□□□□□ -1.27
VPS35-201ENST00000299138 AFAP1L1Q8TED9 768 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 PCDHA7Q9UN72 937 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 PREX1Q8TCU6 1659 aa7.15□□□□□ -1.27
VPS35-201ENST00000299138 INPP5BP32019 993 aa7.14□□□□□ -1.27
VPS35-201ENST00000299138 RABL6Q3YEC7 729 aaPredicted RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 EIF1ADQ8N9N8 165 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 SREK1Q8WXA9 508 aaKnown RBP7.14□□□□□ -1.27
VPS35-201ENST00000299138 APPBP2Q92624 585 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms