RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 GDAP1L1Q96MZ0 367 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 SEC31BQ9NQW1 1179 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.71■□□□□ 0.27
CCNF-201ENST00000293968 TRIM66O15016 1216 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 ZNF174Q15697 407 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 RSRC2Q7L4I2 434 aaKnown RBP16.71■□□□□ 0.27
CCNF-201ENST00000293968 IFNL3Q8IZI9 196 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 SLF1Q9BQI6 1058 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 ABCB6Q9NP58 842 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.71■□□□□ 0.27
CCNF-201ENST00000293968 FBXO2Q9UK22 296 aaPredicted RBP16.71■□□□□ 0.27
CCNF-201ENST00000293968 GUCA1BQ9UMX6 200 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 N4BP1O75113 896 aaKnown RBP16.71■□□□□ 0.27
CCNF-201ENST00000293968 PTPREP23469 700 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 TBX2Q13207 712 aaPredicted RBP16.71■□□□□ 0.27
CCNF-201ENST00000293968 RRAGBQ5VZM2 374 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 KANK3Q6NY19 840 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 CDC23Q9UJX2 597 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 ADGRG1Q9Y653 693 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 SLC4A4Q9Y6R1 1079 aa16.71■□□□□ 0.27
CCNF-201ENST00000293968 ABCC6O95255 1503 aa16.71■□□□□ 0.26
CCNF-201ENST00000293968 CCDC151A5D8V7 595 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 FMNL1O95466 1100 aaPredicted RBP16.7■□□□□ 0.26
CCNF-201ENST00000293968 RGS22Q8NE09 1264 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 FAN1Q9Y2M0 1017 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 TRIM75PA6NK02 468 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 CDC25AP30304 524 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 MAP3K12Q12852 859 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 MORC3Q14149 939 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 BRD3Q15059 726 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 NTRK3Q16288 839 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 NACAP1Q9BZK3 213 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 PRDM11Q9NQV5 511 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 ATG3Q9NT62 314 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 ANKRD20A12PQ8NF67 263 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 PNKPQ96T60 521 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 FAM217BQ9NTX9 383 aaPredicted RBP16.7■□□□□ 0.26
CCNF-201ENST00000293968 TAB2Q9NYJ8 693 aa16.7■□□□□ 0.26
CCNF-201ENST00000293968 XBP1P17861 261 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 RSPH14Q9UHP6 348 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 TRHP20396 242 aaPredicted RBP16.69■□□□□ 0.26
CCNF-201ENST00000293968 NR1I3Q14994 352 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 CAPZA3Q96KX2 299 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 HINFPQ9BQA5 517 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 RASSF4Q9H2L5 321 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 PLEKHA4Q9H4M7 779 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 LRP2BPQ9P2M1 347 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 ANKRD65E5RJM6 399 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 ZNF18P17022 549 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 MDM2Q00987 491 aaPredicted RBP16.69■□□□□ 0.26
CCNF-201ENST00000293968 STRBPQ96SI9 672 aaKnown RBP16.69■□□□□ 0.26
CCNF-201ENST00000293968 ABCF2Q9UG63 623 aa16.69■□□□□ 0.26
CCNF-201ENST00000293968 FEZ2Q9UHY8 353 aaPredicted RBP16.69■□□□□ 0.26
CCNF-201ENST00000293968 AKNAD1Q5T1N1 836 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 DNAJC10Q8IXB1 793 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 KRT23Q9C075 422 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 MARF1Q9Y4F3 1742 aaKnown RBP16.68■□□□□ 0.26
CCNF-201ENST00000293968 DEXIO95424 95 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 SPATA1Q5VX52 437 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 NCAPH2Q6IBW4 605 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 SYMPKQ92797 1274 aaKnown RBP16.68■□□□□ 0.26
CCNF-201ENST00000293968 NAPGQ99747 312 aaPredicted RBP16.68■□□□□ 0.26
CCNF-201ENST00000293968 CCDC196A0A1B0GTZ2 297 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 IRS4O14654 1257 aaPredicted RBP16.68■□□□□ 0.26
CCNF-201ENST00000293968 IFNAR1P17181 557 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 TSR1Q2NL82 804 aaKnown RBP16.68■□□□□ 0.26
CCNF-201ENST00000293968 CAGE1Q8TC20 777 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 TSPYL1Q9H0U9 437 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 LCMT1Q9UIC8 334 aa16.68■□□□□ 0.26
CCNF-201ENST00000293968 PCMTD1Q96MG8 357 aaPredicted RBP16.67■□□□□ 0.26
CCNF-201ENST00000293968 ENC1O14682 589 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 CD44P16070 742 aaKnown RBP16.67■□□□□ 0.26
CCNF-201ENST00000293968 UBE3CQ15386 1083 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 CNGA4Q8IV77 575 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 TMOD3Q9NYL9 352 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 PATL2C9JE40 543 aaKnown RBP16.67■□□□□ 0.26
CCNF-201ENST00000293968 POTEB2H3BUK9 544 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 ABL1P00519 1130 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 PANX2Q96RD6 677 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 MED15Q96RN5 788 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 WDR19Q8NEZ3 1342 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 MYO1CO00159 1063 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 FXR1P51114 621 aaKnown RBP eCLIP16.67■□□□□ 0.26
CCNF-201ENST00000293968 EXOC4Q96A65 974 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 CTAGE1Q96RT6 745 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 CNNM2Q9H8M5 875 aa16.67■□□□□ 0.26
CCNF-201ENST00000293968 EPB41L4AQ9HCS5 686 aaPredicted RBP16.67■□□□□ 0.26
CCNF-201ENST00000293968 SRPRBQ9Y5M8 271 aaKnown RBP16.67■□□□□ 0.26
CCNF-201ENST00000293968 V9GY48 417 aaPredicted RBP16.67■□□□□ 0.26
CCNF-201ENST00000293968 A0A1B0GTH6 734 aa16.66■□□□□ 0.26
CCNF-201ENST00000293968 MFAP3LO75121 409 aa16.66■□□□□ 0.26
CCNF-201ENST00000293968 VSNL1P62760 191 aa16.66■□□□□ 0.26
CCNF-201ENST00000293968 TTLL11Q8NHH1 800 aa16.66■□□□□ 0.26
CCNF-201ENST00000293968 GOLGA5Q8TBA6 731 aa16.66■□□□□ 0.26
CCNF-201ENST00000293968 ANKZF1Q9H8Y5 726 aa16.66■□□□□ 0.26
CCNF-201ENST00000293968 MTMR7Q9Y216 660 aa16.66■□□□□ 0.26
CCNF-201ENST00000293968 ACTN4O43707 911 aaKnown RBP16.66■□□□□ 0.26
CCNF-201ENST00000293968 ERCC5P28715 1186 aaPredicted RBP16.66■□□□□ 0.26
CCNF-201ENST00000293968 TRIML1Q8N9V2 468 aa16.66■□□□□ 0.26
CCNF-201ENST00000293968 ZBTB38Q8NAP3 1195 aaPredicted RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms