RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CCDC125Q86Z20 511 aa21.32■■□□□ 1
UPF1-201ENST00000262803 MLKLQ8NB16 471 aa21.32■■□□□ 1
UPF1-201ENST00000262803 ARPP21Q9UBL0 812 aaPredicted RBP21.32■■□□□ 1
UPF1-201ENST00000262803 H0YCG3 227 aa21.31■■□□□ 1
UPF1-201ENST00000262803 GTF3C6Q969F1 213 aa21.31■■□□□ 1
UPF1-201ENST00000262803 KIFC2Q96AC6 838 aa21.31■■□□□ 1
UPF1-201ENST00000262803 AGTPBP1Q9UPW5 1226 aa21.31■■□□□ 1
UPF1-201ENST00000262803 KRT5P13647 590 aa21.31■■□□□ 1
UPF1-201ENST00000262803 RAPGEF1Q13905 1077 aa21.31■■□□□ 1
UPF1-201ENST00000262803 NSMCE1Q8WV22 266 aa21.31■■□□□ 1
UPF1-201ENST00000262803 TSKSQ9UJT2 592 aa21.31■■□□□ 1
UPF1-201ENST00000262803 DISP1Q96F81 1524 aa21.31■■□□□ 1
UPF1-201ENST00000262803 PRDM1O75626 825 aa21.31■■□□□ 1
UPF1-201ENST00000262803 BAG6P46379 1132 aa21.31■■□□□ 1
UPF1-201ENST00000262803 NBPF11Q86T75 865 aa21.31■■□□□ 1
UPF1-201ENST00000262803 NKIRAS1Q9NYS0 192 aa21.31■■□□□ 1
UPF1-201ENST00000262803 EBAG9O00559 213 aa21.31■■□□□ 1
UPF1-201ENST00000262803 KRT40Q6A162 431 aa21.31■■□□□ 1
UPF1-201ENST00000262803 HDXQ7Z353 690 aa21.31■■□□□ 1
UPF1-201ENST00000262803 GPCPD1Q9NPB8 672 aa21.31■■□□□ 1
UPF1-201ENST00000262803 ASIC2Q16515 512 aa21.31■■□□□ 1
UPF1-201ENST00000262803 CCDC121Q6ZUS5 278 aa21.31■■□□□ 1
UPF1-201ENST00000262803 NT5C3AQ9H0P0 336 aa21.31■■□□□ 1
UPF1-201ENST00000262803 ERBB4Q15303 1308 aa21.3■■□□□ 1
UPF1-201ENST00000262803 KDM3AQ9Y4C1 1321 aa21.3■■□□□ 1
UPF1-201ENST00000262803 NLRP12P59046 1061 aa21.3■■□□□ 1
UPF1-201ENST00000262803 SPC25Q9HBM1 224 aa21.3■■□□□ 1
UPF1-201ENST00000262803 SAMD15Q9P1V8 674 aa21.3■■□□□ 1
UPF1-201ENST00000262803 CCDC169A6NNP5 214 aa21.3■■□□□ 1
UPF1-201ENST00000262803 CHURC1Q8WUH1 139 aa21.3■■□□□ 1
UPF1-201ENST00000262803 PHKBQ93100 1093 aa21.3■■□□□ 1
UPF1-201ENST00000262803 CCDC114Q96M63 670 aa21.3■■□□□ 1
UPF1-201ENST00000262803 MYL10Q9BUA6 226 aa21.3■■□□□ 1
UPF1-201ENST00000262803 MAPK8IP1Q9UQF2 711 aa21.3■■□□□ 1
UPF1-201ENST00000262803 GNA14O95837 355 aa21.3■■□□□ 1
UPF1-201ENST00000262803 DNAJC21Q5F1R6 531 aaKnown RBP21.3■■□□□ 1
UPF1-201ENST00000262803 CYP26C1Q6V0L0 522 aa21.3■■□□□ 1
UPF1-201ENST00000262803 SRGAP1Q7Z6B7 1085 aa21.3■■□□□ 1
UPF1-201ENST00000262803 TEKT1Q969V4 418 aa21.3■■□□□ 1
UPF1-201ENST00000262803 TRIM6Q9C030 488 aaPredicted RBP21.3■■□□□ 1
UPF1-201ENST00000262803 USP44Q9H0E7 712 aa21.3■■□□□ 1
UPF1-201ENST00000262803 DNM3Q9UQ16 869 aa21.3■■□□□ 1
UPF1-201ENST00000262803 SLC1A4P43007 532 aa21.3■■□□□ 1
UPF1-201ENST00000262803 ME3Q16798 604 aa21.3■■□□□ 1
UPF1-201ENST00000262803 SSH3Q8TE77 659 aa21.3■■□□□ 1
UPF1-201ENST00000262803 SPOPO43791 374 aa21.29■■□□□ 1
UPF1-201ENST00000262803 IMPACTQ9P2X3 320 aa21.29■■□□□ 1
UPF1-201ENST00000262803 SYNRGQ9UMZ2 1314 aa21.29■■□□□ 1
UPF1-201ENST00000262803 E7EVH7 732 aa21.29■■□□□ 1
UPF1-201ENST00000262803 ATP5JP18859 108 aa21.29■■□□□ 1
UPF1-201ENST00000262803 MAP7Q14244 749 aa21.29■■□□□ 1
UPF1-201ENST00000262803 TTC38Q5R3I4 469 aa21.29■■□□□ 1
UPF1-201ENST00000262803 SMC1BQ8NDV3 1235 aa21.29■■□□□ 1
UPF1-201ENST00000262803 SELENOSQ9BQE4 189 aa21.29■■□□□ 1
UPF1-201ENST00000262803 ATP7AQ04656 1500 aa21.29■■□□□ 1
UPF1-201ENST00000262803 ZEB2O60315 1214 aa21.29■■□□□ 1
UPF1-201ENST00000262803 SPATA31E1Q6ZUB1 1445 aa21.29■■□□□ 1
UPF1-201ENST00000262803 DAAM2Q86T65 1068 aa21.29■■□□□ 1
UPF1-201ENST00000262803 ZNF496Q96IT1 587 aaPredicted RBP21.29■■□□□ 1
UPF1-201ENST00000262803 NAPGQ99747 312 aaPredicted RBP21.29■■□□□ 1
UPF1-201ENST00000262803 NFE2L3Q9Y4A8 694 aa21.29■■□□□ 1
UPF1-201ENST00000262803 SYCE1Q8N0S2 351 aa21.29■■□□□ 1
UPF1-201ENST00000262803 RNF34Q969K3 372 aa21.29■■□□□ 1
UPF1-201ENST00000262803 PLXNC1O60486 1568 aa21.28■■□□□ 1
UPF1-201ENST00000262803 NOL3O60936 208 aaKnown RBP21.28■■□□□ 1
UPF1-201ENST00000262803 OTUD6AQ7L8S5 288 aa21.28■■□□□ 1
UPF1-201ENST00000262803 ORAI2Q96SN7 254 aa21.28■■□□□ 1
UPF1-201ENST00000262803 STIM2Q9P246 746 aa21.28■■□□□ 1
UPF1-201ENST00000262803 KIF11P52732 1056 aa21.28■■□□□ 1
UPF1-201ENST00000262803 MYRIPQ8NFW9 859 aa21.28■■□□□ 1
UPF1-201ENST00000262803 SAP30BPQ9UHR5 308 aaKnown RBP21.28■■□□□ 1
UPF1-201ENST00000262803 BCRP11274 1271 aa21.28■■□□□ 1
UPF1-201ENST00000262803 EDC3Q96F86 508 aaKnown RBP21.28■■□□□ 1
UPF1-201ENST00000262803 ZAP70P43403 619 aa21.27■■□□□ 1
UPF1-201ENST00000262803 DCAF15Q66K64 600 aa21.27■■□□□ 1
UPF1-201ENST00000262803 CARD6Q9BX69 1037 aa21.27■■□□□ 1
UPF1-201ENST00000262803 E7EWF7 191 aa21.27■■□□□ 1
UPF1-201ENST00000262803 CCNT1O60563 726 aaKnown RBP21.27■■□□□ 1
UPF1-201ENST00000262803 GIGYF1O75420 1035 aaPredicted RBP21.27■■□□□ 1
UPF1-201ENST00000262803 GNPTABQ3T906 1256 aa21.27■■□□□ 1
UPF1-201ENST00000262803 CSGALNACT2Q8N6G5 542 aa21.27■■□□□ 1
UPF1-201ENST00000262803 TLDC2A0PJX2 215 aa21.27■■□□□ 1
UPF1-201ENST00000262803 DSCC1Q9BVC3 393 aa21.27■■□□□ 1
UPF1-201ENST00000262803 PSMC4P43686 418 aa21.27■■□□□ 1
UPF1-201ENST00000262803 SWAP70Q9UH65 585 aa21.27■■□□□ 1
UPF1-201ENST00000262803 DLGAP5Q15398 846 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 LGSNQ5TDP6 509 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 LRWD1Q9UFC0 647 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 SSH2Q76I76 1423 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 PAK1Q13153 545 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 ATP8A2Q9NTI2 1148 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 H7C1D1 291 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 ZBTB24O43167 697 aaPredicted RBP21.26■□□□□ 0.99
UPF1-201ENST00000262803 IRX3P78415 501 aaPredicted RBP21.26■□□□□ 0.99
UPF1-201ENST00000262803 CTDSPL2Q05D32 466 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 GPATCH11Q8N954 259 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 PALD1Q9ULE6 856 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 ARHGAP6O43182 974 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 FAM76AQ8TAV0 307 aa21.26■□□□□ 0.99
UPF1-201ENST00000262803 DAPK3O43293 454 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms