RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PRKAB2O43741 272 aa11.86□□□□□ -0.51
CLN3-261ENST00000637686 HLA-DOAP06340 250 aa11.86□□□□□ -0.51
CLN3-261ENST00000637686 ZBTB48P10074 688 aaPredicted RBP11.86□□□□□ -0.51
CLN3-261ENST00000637686 ERO1BQ86YB8 467 aa11.86□□□□□ -0.51
CLN3-261ENST00000637686 REM2Q8IYK8 340 aaPredicted RBP11.86□□□□□ -0.51
CLN3-261ENST00000637686 APPBP2Q92624 585 aa11.86□□□□□ -0.51
CLN3-261ENST00000637686 OSBP2Q969R2 916 aa11.86□□□□□ -0.51
CLN3-261ENST00000637686 EVI5LQ96CN4 794 aa11.86□□□□□ -0.51
CLN3-261ENST00000637686 OTUD5Q96G74 571 aa11.86□□□□□ -0.51
CLN3-261ENST00000637686 SPDYE5A6NIY4 337 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 ZFYP08048 801 aaPredicted RBP11.85□□□□□ -0.51
CLN3-261ENST00000637686 TM4SF4P48230 202 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 SREBF2Q12772 1141 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 RRP1BQ14684 758 aaKnown RBP11.85□□□□□ -0.51
CLN3-261ENST00000637686 LRRFIP1Q32MZ4 808 aaKnown RBP11.85□□□□□ -0.51
CLN3-261ENST00000637686 NOL9Q5SY16 702 aaKnown RBP11.85□□□□□ -0.51
CLN3-261ENST00000637686 TTC22Q5TAA0 569 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 FOXP4Q8IVH2 680 aaPredicted RBP11.85□□□□□ -0.51
CLN3-261ENST00000637686 SCYL3Q8IZE3 742 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 CRACR2BQ8N4Y2 399 aaPredicted RBP11.85□□□□□ -0.51
CLN3-261ENST00000637686 TRIM34Q9BYJ4 488 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 DCP1AQ9NPI6 582 aaPredicted RBP11.85□□□□□ -0.51
CLN3-261ENST00000637686 RNF186Q9NXI6 227 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 HERC5Q9UII4 1024 aaKnown RBP11.85□□□□□ -0.51
CLN3-261ENST00000637686 TSKSQ9UJT2 592 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 MYH1P12882 1939 aa11.85□□□□□ -0.51
CLN3-261ENST00000637686 MANSC4A6NHS7 340 aaPredicted RBP11.84□□□□□ -0.51
CLN3-261ENST00000637686 TRIM6-TRIM34B2RNG4 842 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 M0R2C6 588 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 CTNND1O60716 968 aaKnown RBP11.84□□□□□ -0.51
CLN3-261ENST00000637686 EIF5BO60841 1220 aaKnown RBP11.84□□□□□ -0.51
CLN3-261ENST00000637686 POLR3DP05423 398 aaPredicted RBP11.84□□□□□ -0.51
CLN3-261ENST00000637686 PLCD1P51178 756 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 PPATQ06203 517 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 TTC6Q86TZ1 520 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 METTL16Q86W50 562 aaKnown RBP11.84□□□□□ -0.51
CLN3-261ENST00000637686 RILPL2Q969X0 211 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 MS4A4AQ96JQ5 239 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 STRBPQ96SI9 672 aaKnown RBP11.84□□□□□ -0.51
CLN3-261ENST00000637686 SEC62Q99442 399 aaKnown RBP11.84□□□□□ -0.51
CLN3-261ENST00000637686 PICK1Q9NRD5 415 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 MCM9Q9NXL9 1143 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 SLC4A4Q9Y6R1 1079 aa11.84□□□□□ -0.51
CLN3-261ENST00000637686 SIPA1L1O43166 1804 aa11.83□□□□□ -0.51
CLN3-261ENST00000637686 IRF6O14896 467 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 CA12O43570 354 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 TRPA1O75762 1119 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 CYP2D6P10635 497 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 HSPA8P11142 646 aaKnown RBP11.83□□□□□ -0.52
CLN3-261ENST00000637686 CTCFP49711 727 aaPredicted RBP11.83□□□□□ -0.52
CLN3-261ENST00000637686 GTF2A2P52657 109 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 LBX1P52954 281 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 INHBEP58166 350 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 PPIL2Q13356 520 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 ZMYM1Q5SVZ6 1142 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 IFFO2Q5TF58 517 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 DNAJC18Q9H819 358 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 ATP8A2Q9NTI2 1148 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.83□□□□□ -0.52
CLN3-261ENST00000637686 SERPINB13Q9UIV8 391 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 ZHX2Q9Y6X8 837 aa11.83□□□□□ -0.52
CLN3-261ENST00000637686 TESPA1A2RU30 521 aaPredicted RBP11.82□□□□□ -0.52
CLN3-261ENST00000637686 GPAA1O43292 621 aa11.82□□□□□ -0.52
CLN3-261ENST00000637686 PTPRAP18433 802 aa11.82□□□□□ -0.52
CLN3-261ENST00000637686 CAP2P40123 477 aa11.82□□□□□ -0.52
CLN3-261ENST00000637686 EVX2Q03828 476 aa11.82□□□□□ -0.52
CLN3-261ENST00000637686 CCDC84Q86UT8 332 aaPredicted RBP11.82□□□□□ -0.52
CLN3-261ENST00000637686 IFNL1Q8IU54 200 aa11.82□□□□□ -0.52
CLN3-261ENST00000637686 DDRGK1Q96HY6 314 aa11.82□□□□□ -0.52
CLN3-261ENST00000637686 PTPN18Q99952 460 aa11.82□□□□□ -0.52
CLN3-261ENST00000637686 NAV1Q8NEY1 1877 aa11.82□□□□□ -0.52
CLN3-261ENST00000637686 DDX60LQ5H9U9 1706 aaKnown RBP11.81□□□□□ -0.52
CLN3-261ENST00000637686 CCL15-CCL14A0A0B4J2E2 113 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 GSG1L2A8MUP6 293 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 USP17L12C9JPN9 530 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 USP17L21D6R901 530 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 IGF2BP3O00425 579 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLN3-261ENST00000637686 TBC1D8O95759 1140 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 JAG1P78504 1218 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 SNAPC2Q13487 334 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 CCL15Q16663 113 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 SHROOM1Q2M3G4 852 aaPredicted RBP11.81□□□□□ -0.52
CLN3-261ENST00000637686 BRI3BPQ8WY22 251 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 EHD4Q9H223 541 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 SAGE1Q9NXZ1 904 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 AFG3L2Q9Y4W6 797 aa11.81□□□□□ -0.52
CLN3-261ENST00000637686 DOCK1Q14185 1865 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 BAZ2AQ9UIF9 1905 aaKnown RBP11.8□□□□□ -0.52
CLN3-261ENST00000637686 CYP2D7A0A087X1C5 515 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 PATL2C9JE40 543 aaKnown RBP11.8□□□□□ -0.52
CLN3-261ENST00000637686 SMIM22K7EJ46 135 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 CXCL11O14625 94 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 GDF11O95390 407 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 APPP05067 770 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 CETPP11597 493 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 GSPT1P15170 499 aaKnown RBP11.8□□□□□ -0.52
CLN3-261ENST00000637686 GNAT2P19087 354 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 GABPAQ06546 454 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 TATDN1Q6P1N9 297 aa11.8□□□□□ -0.52
CLN3-261ENST00000637686 CTR9Q6PD62 1173 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms